Pangasianodon hypophthalmus (striped catfish): 113532342
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Entry
113532342 CDS
T05759
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113532342 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113532342 (cpsf3)
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113532342 (cpsf3)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113532342 (cpsf3)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113532342 (cpsf3)
U7-dependent histone pre-mRNA processing factors
113532342 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
PAP-OAS1
Beta_lactamase3
Gp58
Motif
Other DBs
NCBI-GeneID:
113532342
NCBI-ProteinID:
XP_026779491
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MATKRKSDVPVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSYKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
ILYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALILEYEENDDERIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCVQGQRVSGILVKRNFSYHILTPSDLSNYTDLSMSTVKQSQAIPFTGPFSLLHSQLRHL
AGHVEEVETAEKNTLRIFNSITLIHDANMVILEWIANPLNDMYADAVTTVVLEVQSNPKA
QKIMQPTEEKVDPDIFQNRLQIMFHDMFGEECVDFKDKNNLSVTVDGKTAYINLETRTVE
YEEGSADDESLREMVEHAVQRLYDAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaagcggaagtcagatgtgccggtgcccgctgaggaaagcgaccagcttctc
ataagaccgctgggagctggtcaagaagtgggcagatcatgcatcattttggaattcaag
ggacgtaaaattatgctggactgtggtatccaccctggattagagggaatggatgcattg
ccttacattgatttgattgaccctgctgaaattgatctcctcctcatcagccactttcat
ctggatcactgtggggcactgccgtggtttttacagaaaacaagttataaaggaaggact
ttcatgacccacgcgaccaaagccatttaccgttggctactttcagactacgtcaaagtc
agtaatatttcagcagatgacatgttgtacacagagacagatttggaagaaagcatggat
aagatcgagacgatcaacttccatgaggtgaaagaggtggctggcattaagttctggtgc
taccatgctggccatgtcttgggtgcagccatgtttatgatcgagattgctggtgtgaag
attctttatacgggagatttctctcgtcaagaagacagacatttaatggcagcagagatt
cccagcgttaagccagacatcctgatcacggagtctacatacggaacccacatccatgag
aagagagaggaaagagaagctcgtttttgtaacacagtccatgacattgtgaatcgggaa
ggccgctgtctcatccccgtcttcgctctgggtcgagcacaagagctcctcctcatcctt
gatgaatattggcagaatcatcctgagcttcatgacattcctatttactatgcctcatcc
ctggccaaaaagtgtatggctgtgtaccagacttatgtcaacgccatgaatgacaagatc
cgcaaagccatcaatatcaacaacccctttgtcttcaagcacattagcaacctcaagagc
atggaccattttgatgacattggccccagtgtggtgatggcgtctcctggtatgatgcag
agtggcctctccagagagctgtttgagagttggtgcactgacaagaggaacggtgtgatc
atcgctggctactgcgtggagggaacacttgcaaagcacatcatgtctgagccggaggag
atcaccaccatgtcgggccagaagctgccgctgaagatgtctgtggactacatttccttc
tcagctcacactgactaccagcagaccagcgagttcatccgagcactcaaaccaccccat
gtgatcctggtgcatggagagcagaatgagatggctcgactcaaggcagctctcatttta
gagtatgaagaaaatgatgatgagcgcattgaggtacataatccccgcaacaccgaggca
gtcacactcaacttcagaggagagaaactggccaaggtgatggggtctcttgctgataag
aagtgtgtgcagggtcagagggtctctgggatcttggtgaaacgaaactttagttatcac
atcctcacaccctcggacctctccaattatacagatttgtctatgagcacagtgaagcag
tctcaagccattcccttcactggacccttctccctactgcacagccagctacgtcacttg
gcagggcatgtagaagaggtggagacagcagagaaaaacacactaaggatctttaacagc
atcacattgattcacgatgccaatatggtcatactggagtggattgccaaccccctgaat
gatatgtatgctgatgcagtcacaactgtggttctggaggtccagtcaaatccaaaagct
cagaaaatcatgcagcccacagaggagaaggtggatccggatatcttccagaacagacta
cagatcatgttccatgacatgtttggtgaggaatgtgtagactttaaggacaaaaacaat
ctgtctgtaacagtggatggcaagactgcctacattaaccttgagaccaggacggtagag
tatgaggaaggcagcgcggatgatgagtctctcagagagatggtggaacacgctgtgcag
aggctctacgatgccatgaatcctgtgatgtga
DBGET
integrated database retrieval system
