Pangasianodon hypophthalmus (striped catfish): 113532377
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Entry
113532377 CDS
T05759
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113532377 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113532377 (arid1b)
03021 Transcription machinery [BR:
phyp03021
]
113532377 (arid1b)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113532377 (arid1b)
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Helix-turn-helix
ARID
113532377 (arid1b)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113532377 (arid1b)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113532377 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
113532377
NCBI-ProteinID:
XP_026779559
LinkDB
All DBs
Position
Unknown
AA seq
2039 aa
AA seq
DB search
MGSRFESSKTSNDNNNNSSSRSSSNNNNTNDDGSESSRSGNGSGFEFNHYYGDGRRGGPC
FDQHGGQQSLGAVTHSARNNMDQMQNSHEEYHNNPYNHYPNYRSGYGGAGYGMMSPSRQG
NAMGPGSNSATAAAAAAAAAAAHGKAAMASPSAPSPAANVGGFQRFPPGQNQQQQHPSGA
TPTLNQLLTSPSPMMRGYGSGYQDYNNNPSAQQQASMGLGKDMSSPYGSASHGWGAQQRN
HPAMSPGNNGQGNNRSQVAPLDAMAMKRSQIYSMANSPYSQQQQQQQPGGAYSGQPYGAP
APHRYPMGMQGRGQVGMGSLQYHHQQVPAQYGQQGMGGYCQQGQPPYFSPPHQQPAAPSQ
PHYMQPRAPPQQDAPQEAYGSRAQPAMTPGKPNHDEMGLNQQERPSSLPDLSGSIDDLPT
GTEAALSSAVSASGSTSSQGEQSNTAQSPFSPHASPRLSGLRSGPSPSPVGSPVGSSQSR
SGPISPASVPGTQMAPQTPGNVSDVASHSTLSQSPMSQERGFASTLQRSGPGPQFGPQQP
GPPMSPHPSPGGAMHHSVGSYQHSGPGYGPQGGQYGPSGNYPRPPSYGGAPGPSYSGPGP
GMSLGMNASSPMHGQGPGQPCGSMPAARGPAQPGGGRPYPAGSSSAAPTSPSMPQSAGPG
MGPPPLTGGRKPHESGTAPSPQNPHAPGPARPPYTRSPAYPGVRPNPFTPPHFPQPHTGL
YTTGPGQPQPEHYGSGGYPGGPPMGGMGPGGPYNPPQSANSSRMNLQGPPYSTMPSGPMP
MGPGEGMPPTEPKQRAEKEEGSVAGNEPPKSKKPNSATMTNEKITRLYEMGNEPERRAWV
DRYLAFMEERGTPVPNLPAVGKKPLDLCRLYLCVRDIGGLAMVNKNKKWRELSTLLNVGT
SSSSASSLKKQYIQYLFAYECKVERGEEPPPDAFNMDSKKQQQAKIQPPSPANSGSLQGP
QTPQSTGSSSMTEMPGDLKPPTPASTPHSHMPPQQSGRNSGVSVQDPFSDNSDLAFQKRA
NVPPGMMYQQGGGGMDARMQYDANKEPYGGQRKGGNDSFMPGPMPSSGMQDMYPRGPQGM
GMRPQYPYSQGFDRRPDHAMGPDGGMVPPGNQNNMMPSNSDPNMYPGNRYPSHQRHGHDG
YGQQYPQGMPYSAHGMYPQPQGYKRPGEGMYGPPAKRHEGDSYGMQFSGQQPDMYGQYSG
YPERRPMQGQFPYPYNRERMQHGGQGPPQHGIMGGGPSSTPSGGPQGNMWHPRTDMGYPY
PSRQGHGPPYPSMSRADDPEGRANQDSQWPSHPGQRQSPYPPQSSASSMPPMTNRQPPSS
YQSPPAIPNHIARAPSPAPFPRPMGGSMSPNKAHLMPSMKMPKPGVPGSMPGSQSGGVPS
QGLPPIHREISFPLDSVEATQPQLKPRRRLTSKDIGTPEAWRVMMSLKSGLLAESTWALD
TINILLYDDNTVSSFTLSQLPGFLELIVEYFRRCLIEIFGILEEYEVGTEGQKTLLGPLP
EPAEKEELEHQEHDSHSNTEQADKKPEAESQRCVPSSTSGADPLEKKPAETVEQEKDRQN
EAGKEDSPSTEPRPKQASKYDRLPVKVEEREAITDLVEDRSEQLGLAGEFISGLLHWKAG
GGDSTAHIQTHFDRRFDETGTKPVMTMDLEEVKEQDTEDPTQEESSHKQDQGVTDNSLTA
TADGTGSLPESGAQESTSQSQENHRSITLLEDEPRCWDEAPLSTAENWQDELAKRCICIS
NIVRGLSFVPGNDADMARHPGLVLILGKLVLLHHEHPKRKRTPPTYQREEERSLACSKDE
WWWDCLGALHENTLVTLANISGQLDLSVYPESICLPILDGLLHWMVCPSAEAQDPFCTAS
GFSSLTPQRLVLECLCKLSIQDCNVDLLLATPPFSRQERLFATLVRHVGERKSQVCREMA
VAVLANLAQGDPTAARAIALQKGSIGTLIGFLEDSLAMAQYQQSPHSLLHAGHPTHPEPP
SINMMCRAAKALMAIAQVEENRPEFVLYESRLLDITLSSVLNSSVAAILCEVLFKLGRS
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
atgggcagcaggttcgagtcgtctaaaacgagtaacgacaacaacaacaacagcagcagc
aggagcagcagcaacaacaacaacaccaacgacgacggcagcgagtcgtctcgaagtggg
aacggctcaggttttgagtttaatcattattatggggatggaagaagaggagggccttgc
tttgatcaacatggcggacaacaaagccttggtgctgtaacgcattcggcacggaacaac
atggatcaaatgcaaaactcgcacgaagagtatcacaataatccgtataaccactatccg
aactaccgatccggttacggtggggctggatatgggatgatgagcccatcgcggcaagga
aacgccatgggcccgggcagcaactcggctacagccgccgccgccgccgctgctgctgct
gctgctcacggtaaagctgctatggcttctccttctgccccgtctcctgctgcaaacgtc
ggcggctttcagaggtttccgccaggccagaatcagcagcagcagcacccatcaggcgcc
acgccgactttaaatcagcttctgacctctccgagccccatgatgcgcggttatggcagc
ggctatcaagattacaataataatccctcggctcagcagcaggcgagcatggggctcggc
aaagacatgagctccccatacggctccgccagccacggctggggggcacaacaaagaaac
cacccggccatgagccctggaaataacggccaaggaaacaacagatcccaggtggcacct
ctggacgccatggccatgaagcgctcccagatttacagcatggcaaacagcccttattct
cagcaacagcagcagcagcaaccgggcggagcctactccggccagccatacggagctccc
gctccacaccgatatccaatgggaatgcaggggcgtggccaagttggtatgggatccttg
cagtaccatcatcagcaggtaccggcgcagtatggacagcagggcatgggtggatactgc
caacagggtcagcctccatacttcagccctcctcatcagcagcctgcagctccctctcag
cctcactacatgcagccacgagctccgccgcagcaggatgctcctcaggaggcgtacggc
agcagagcccagcccgctatgactcccgggaagcccaaccacgacgagatgggcctgaac
cagcaagagaggccatcaagccttccggacctgtcgggctccatagacgacctcccgacg
gggacggaggcagcactgagctcagccgtcagcgcctcgggttccaccagcagccagggc
gagcagagcaacacagcgcagtccccattctcccctcacgcatcgccccgtctctctggc
ctgcgcagcggaccttcaccttctccggtcggctcacccgtgggctccagccagtcacga
tccggacccatatcacctgccagtgtgccaggtacacagatggcaccgcaaaccccaggg
aatgtatcagatgtggcctcccattccaccctcagtcagtcgcccatgtctcaggagagg
ggatttgcctccaccctgcagcgcagtggccctggccctcagtttggcccccagcagcct
ggacctcccatgtcccctcacccgtccccaggaggcgccatgcaccacagcgtgggctct
taccagcacagtggccccggatacgggccccagggcgggcagtacggcccttcaggtaac
taccctcgtccacccagctacggcggtgctccaggccccagctacagcggtcccgggcct
ggcatgagcctgggcatgaacgccagcagccccatgcacggccagggacccggacagccc
tgtggctcgatgcctgctgctaggggtcccgctcagccagggggaggacgtccataccca
gcaggctccagcagcgcggcacccacatctcccagcatgcctcagtctgcagggcccggc
atgggcccacctccacttacaggtggccggaaaccccacgagagcggcactgctccctca
ccacagaacccccacgcacccggaccggccaggcctccatataccaggtcccctgcgtac
ccgggggtacggccgaacccctttactcccccccatttccctcagccccataccggcctc
tacaccaccggcccaggccagcctcagcccgagcattatgggtcaggcgggtacccaggt
gggcccccgatgggcgggatgggtcccggaggcccctacaacccaccgcagagcgctaac
tcgagcaggatgaacctccagggtcctccatacagcaccatgccttcgggacccatgccc
atggggcccggagaaggcatgcctcccactgagccgaaacagagagcagagaaggaggaa
ggcagcgtggctggcaacgaaccacctaagtcaaagaagccgaactcagccaccatgacg
aatgagaagattacacgtttgtatgagatggggaatgagccggagaggagggcctgggtg
gaccgttacctggccttcatggaggagaggggcacacctgtacccaacctacctgctgta
ggcaagaagcccctggacctgtgccgcctctacctgtgtgtgcgtgacatcggaggcttg
gccatggtgaataagaataagaagtggcgcgagctctccactcttctgaacgtgggaaca
tccagcagctcagctagctctctgaagaagcagtacatccagtacctctttgcttatgag
tgtaaggtggagcgtggtgaagaacctccaccagacgccttcaacatggacagcaagaag
cagcagcaagccaagatccagccaccatcaccggcgaactccggctctctccagggccct
cagactcctcagtctacaggcagcagctccatgacagagatgcccggggatttaaagccc
ccgactcccgcctcaactccacacagccacatgccccctcagcaaagtggcagaaacagt
ggtgtcagtgtgcaggatccgttttctgataacagcgatctagctttccaaaagcgagcc
aacgtcccacctggtatgatgtaccagcagggaggagggggcatggatgcacgaatgcag
tatgatgccaacaaggagccctatggaggtcaaaggaaaggtggcaacgactctttcatg
ccagggccaatgcccagcagtggcatgcaggacatgtacccacgaggaccccagggcatg
ggcatgagaccccagtacccttacagccaaggctttgacagaaggcctgaccatgccatg
ggcccagatggtggaatggtgccccctggaaatcagaacaacatgatgccttccaacagc
gatccaaacatgtacccaggcaatagatacccgtcacatcagaggcatggccatgatggc
tatggacagcagtatcctcaaggcatgccatacagtgcacatggaatgtacccacagcca
cagggctataagagacctggggaagggatgtatggccctccagcaaagcgacatgagggt
gattcctatggcatgcagttcagtggccagcagccggatatgtatggccagtacagtgga
tacccagagcgcagacctatgcagggccagttcccatacccatataaccgtgaacgcatg
cagcatgggggacagggaccacctcagcatggcattatgggtggaggaccgtcctccact
cccagtggggggcctcaaggtaacatgtggcaccctaggactgatatgggctacccttac
cctagcagacagggccacgggcctccatacccatccatgagccgtgcagatgacccagag
ggcagggcaaatcaggacagtcagtggccgagtcacccgggccaacgtcagtcgccttat
cctccccagtcttctgctagctccatgccacccatgacaaaccgacagcctccgtcctct
taccagtcccctccagccataccaaaccacatcgcccgtgctccgagtccagccccattc
cccagacccatgggaggttctatgtcccccaataaagctcatttgatgccatcaatgaag
atgccaaaaccaggggttcccgggtctatgccaggctctcagagtggtggtgtccccagt
caaggcctcccacccatacaccgagagatcagctttccactggattccgttgaggctaca
cagcctcagctaaagcctcgccgaaggttaacttctaaagacattgggacaccagaggcc
tggcgtgtgatgatgtctctgaagtctggtttgctagccgagagcacttgggctttggac
acaataaacattttgctatatgatgataacacagtgtcttcttttaccttgtcacagttg
ccaggtttcttggaacttatagttgaatatttcagaagatgtttgattgagatctttgga
atccttgaggaatatgaagtgggtactgagggccagaagacacttctcggccccctccca
gagccagcagaaaaagaggaattggagcatcaggagcatgatagtcattcaaatactgag
caggcagacaagaagcctgaagcagagtctcaaaggtgtgtccccagcagcacctctgga
gcagaccccctggagaagaagccagcagagacagttgagcaggagaaggatagacaaaac
gaagcgggtaaagaagattctccttccacagaacccaggcccaagcaagctagcaagtat
gacagattgccagtgaaggtggaggagagggaggcaatcacagacctggtggaagaccga
tcagaacagctgggcttggctggagagttcatcagtggcctactgcactggaaggctggc
ggaggagactccactgcccacatccagacccactttgatagaagatttgatgagacagga
actaaaccagtaatgacaatggacctagaggaggttaaagaacaagacactgaggatccc
actcaagaggaatcatctcataagcaagaccaaggtgtcacagataatagtctgacagcc
actgcagatggtacaggatctctacccgagagtggggcccaagagtccacctcacagagc
caagagaaccaccgcagtatcaccctgctggaagatgaaccacgttgctgggatgaggca
ccactttccacagccgagaactggcaggatgagctggcgaaacgctgcatatgcatctcc
aacatagtccgtgggctctcctttgtgccaggtaatgatgctgacatggcacggcatcca
ggtctggtacttatattgggtaagctggtgctcttgcaccatgagcacccaaagaggaag
aggacacccccaacctaccaacgtgaagaggagcgaagtctggcttgtagcaaggatgag
tggtggtgggactgccttggtgccttgcatgagaacaccttggtgaccttggccaacatt
tcagggcagcttgatctgtcagtctaccccgagagcatctgcttacccattctggatggg
cttttgcactggatggtttgtccatcagccgaggcccaggatcctttttgcacggcgagc
ggcttctcttctctgacaccacagaggctggtgctggagtgcttgtgcaaactgagcatc
caggactgtaatgtggacctgctattagcaacaccaccattcagccgccaggaacgcctc
tttgcaacgttagtgcgtcacgtgggtgaacgtaaaagccaggtgtgccgggagatggct
gtggccgtcctcgccaacctggcgcagggtgatcccacggcagcgcgggccattgcactt
cagaagggcagcattgggaccctgataggctttttagaggacagtcttgccatggcacag
tatcagcagagccctcatagcctactacatgcaggacatccaacccacccagagccaccc
agcatcaacatgatgtgccgggctgctaaagctttaatggcgattgctcaggttgaggag
aaccggcccgagtttgtgttgtacgagagccgcctgctggacatcacgttgtcatccgtg
ctgaactctagcgtggcagccattttgtgcgaggtgctgtttaagctgggacgctcgtga
DBGET
integrated database retrieval system
