KEGG   Pangasianodon hypophthalmus (striped catfish): 113532401
Entry
113532401         CDS       T05759                                 
Symbol
kdm5a
Name
(RefSeq) lysine-specific demethylase 5A isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:phyp01009]
    113532401 (kdm5a)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:phyp03036]
    113532401 (kdm5a)
Enzymes [BR:phyp01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     113532401 (kdm5a)
Protein phosphatases and associated proteins [BR:phyp01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     113532401 (kdm5a)
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    113532401 (kdm5a)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID zf-C5HC2 JmjN PHD_ash2p_like PHD_5 KAR
Other DBs
NCBI-GeneID: 113532401
NCBI-ProteinID: XP_026779600
LinkDB
Position
Unknown
AA seq 1708 aa
MAVYTEFLPPPECPVFELSWEDFSDPLGFISKIRPIAEKSGICKIRPPQDWQPPFACDVR
NFRFTPRVQRLNELEALTRVKLNFLDQIAKFWELQGSKLRFPHVERKILDLYLLSKIVSS
EGGFEAVCKEKRWSKIATRMGFPAGKGIGSLLRSHYEKILYPYELFQSGASLSGIHRLCQ
EGDEAEEVDEGIDRGCEEDEEDEEEKPREKEDKERDGLSDKSQKKEHTIPERRSRRLKSE
RENKEPKGLQIFSSSPKVVDFEIVPADDAFIKKQKHLKAQAFAIKMRPRKQTLEVNFIDL
YMCMACGRGDEEDRLLLCDGCDDSYHTFCLIPPLQDVPKGDWRCPKCVAEECSKPREAFG
FEQAVREYTLQSFGEMADHFKSDYFNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADI
SSKDVGSGFPVRDGKRRLLGDEEDYSNSGWNLNNMPVLEQSVLAHINADISGMKVPWLYV
GMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPAHAAEQLEAVMKKLAPELFDSQPDLL
HQLVTIMNPNVLMEHGVPVYRTNQCAGEFVVTFPRAYHSGFNQGYNFAEAVNFCTADWLP
MGRQCVAHYRRLQRHCVFSHEELLCKMAADPESLDVELAAAVCRELAEVIEEESRLRQAV
QDMGLQSSEQEVFELVPDDERQCYKCKTTCFLSALTCSCSPERLVCLHHAADLCNCPLTN
KCLRYRYDVEEFPAMLYGVKSRAQSYDTWAKRVSEALSADQKNKKDLIELKVLMEDAEDR
KYPENNLFRKLREMVKEAETCSSVAQLLLNHKQRHKRERTEISRTRTKLTVEELKAFVEQ
LFRLPCIISQARQVKELLENVEDFHERSQLALADETPDSAKLQALVELGSGLDVELPELA
RLKQELQQARWLDEVRLTLHEPHRVTLELMKRLIDSGVGLAPHHAVEKAMAELQELLTVS
ERWEDKARACLHARPRHSMVTLESIVVEAKNIPAYLPNVLALREALHKAKEWTARVEAIQ
NGTSYAYLDQLEALLARGRSIPVRLDALPQVESQVASARAWRERTARTFLKKNSTYTLLQ
VLSPRADIGVYGSSRSKRRRAKELLEKERGAEPESLSDLDEAADEERSPSAVVAAFKAQE
QQEAEAMHSLRAANLAKMSMAERIDEVRFCLCRKTAGGVMLQCELCKDWFHGACVPLPKA
GSQKKLTTGSSWQSASKESKFLCPLCQRSRRPRLETVLSLLVSLQKLPVRLPEGEALQCL
TERAMSWQDRARQALATDELSSALAKLSVLSQRMVELAAREKTEKIINAELQKAAANPDL
QGHIQTFQQAGFNRATSPRTSLDYDDEETDSDEDIRETYGYDMKDSGEVKPYLFCDEEIP
VKSEEVVSHMWPATPSFCAEHAYSSASKSCPQNPTTPRKQPRKTPLVPRSLEPPVLELSP
AAKAQLEVLMMEGDLLEVSLDETQHIWRILQATHPPSEERFLQVESEDTLLEKPMKLKVK
EMEKKRKRKLERAEQQLLLASSGVEGRPKCKDMKRVLEVGGKPKKKKLKLSPEKSRELKQ
LAKRLAKEEKERKRKEKAAAKAEFAKEGLEKKKEKKILDIPSKYDWSGAEDSNDENAVCA
AKNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSCEMAENEDYICSACSRKAGGVMGVKVG
VETVVMTSAMCSTQTLSPLYQAEVQEGS
NT seq 5127 nt   +upstreamnt  +downstreamnt
atggctgtgtacaccgagttcctgcctcctccggagtgcccggtgtttgagctgagctgg
gaggatttctctgatccgctcggcttcatcagcaagatcagacctatcgcagagaaaagc
ggcatctgcaagatcagaccacctcaggactggcagcctcctttcgcttgtgatgtccgc
aacttccgcttcactccacgagtccagcggctcaatgagcttgaggccctcaccagagta
aaactcaacttcttggatcaaattgcgaagttttgggaactccagggctctaaactacgc
tttccacatgtggagagaaaaatcctggacttgtaccttctcagcaagattgtgtcttct
gagggaggtttcgaggctgtctgtaaggagaagcgctggtccaagatagccactcgtatg
ggtttcccagccgggaagggcattggatccttgttgcgctctcactacgagaagatcctc
tacccatatgagctctttcaatctggagcttcactctccggcatccaccggctgtgtcag
gagggagacgaagctgaagaggtggatgaaggaatagaccgtggctgtgaggaggatgag
gaggatgaagaagagaaacctagagagaaggaagacaaggagcgagatggtctgagtgac
aagtcgcagaagaaggagcacaccattcctgagagacgttcacgacgcctgaagtctgag
agagagaacaaagagcccaaaggcctgcagatcttcagcagcagtcctaaggtggtggat
tttgagatcgttcctgccgatgacgctttcataaagaagcagaagcacctgaaggctcaa
gcatttgctattaagatgcgtccacgcaaacagactctggaggtcaattttattgacctg
tacatgtgtatggcgtgtgggcggggtgacgaggaggaccgcttgctgttgtgtgacggc
tgtgatgacagctaccacaccttttgcctgatcccaccgcttcaggatgtgcccaagggt
gactggcgttgtcccaagtgtgtggcagaggagtgcagcaagccccgggaggcatttggg
tttgagcaggccgtgcgtgaatacacactccagagctttggagagatggcagaccatttt
aaatctgactacttcaacatgccagttcatatggtccctacagagctggtggagaaagag
ttctggaggctggtaagcagcatagaggaggatgtgatagtcgagtatggagcagatatc
agctccaaagatgtggggagcggctttcctgtccgagacggaaaaagaagactattgggg
gacgaggaggactacagcaactcaggctggaacctgaacaacatgccagtgctggagcag
tccgtgcttgcccacattaatgcagacatctcggggatgaaggtaccctggctttatgta
ggcatgtgcttctcttccttctgctggcacatcgaggaccactggagctactccatcaac
tatctgcactggggagagcctaagacctggtatggagtcccggctcatgcggcagagcag
ctggaggcggtgatgaagaaactggcaccagagctgttcgactctcagcctgatctactg
caccaactggtcaccatcatgaaccccaacgttctaatggagcacggtgttccagtgtat
cgaaccaatcagtgcgctggagagtttgtggtgaccttcccgagagcctatcacagcggc
ttcaaccagggctacaactttgctgaagctgtcaacttctgcactgcagactggctaccc
atgggccgtcagtgtgtggcgcactaccggcggctgcagcgtcactgcgtgttctcccat
gaggagctgctgtgtaagatggcggcggaccctgagagcctggacgtggagctggctgca
gccgtgtgccgagagctagcagaggtgatcgaggaggagagcagactccgacaggctgtt
caggacatggggttgcagtcctcagaacaggaagtgtttgagctggttccagatgatgag
cggcagtgttacaagtgtaaaaccacctgcttcttgtctgctctgacgtgctcgtgcagt
ccagagcgccttgtctgtctgcaccatgctgctgatctctgcaattgtcctcttacaaac
aagtgcctcaggtaccggtatgatgtggaggagttccctgccatgctgtatggggtaaag
tcccgcgcccagtcctatgatacctgggccaaaagagtcagtgaggcactgtcagctgat
cagaagaacaagaaagatcttatcgagctaaaggtgttgatggaggacgcagaggacagg
aagtacccagagaacaatctgttccgtaagctgagagagatggtgaaggaggcggagacc
tgctcttctgtagcccagcttctgctcaaccacaaacagagacacaaaagggagcgcaca
gagatcagtcgtacacgcaccaagctgacggtggaggagctgaaggcgtttgtggagcag
ctgttccgtctgccatgtatcatcagccaggcgcggcaggtcaaagagctgctggagaac
gtggaggacttccacgagcgctctcagctggccctggcagacgagaccccagattcagct
aagctgcaagctctggtggagctgggctcagggcttgatgtggagctgccagagctggcg
cgtttgaagcaggagctgcagcaggcccgctggctggatgaggtgcgtctcaccctgcac
gagccacaccgagtcacacttgagctcatgaagcgcctcatcgactcgggtgtgggtctg
gccccgcaccacgctgtggagaaagccatggctgagctgcaggaactcctcactgtgtct
gagcgctgggaggacaaggcgcgtgcatgcctgcatgccagacctcgccacagtatggtc
accctcgaaagcatcgttgtagaggctaagaacatccctgcctatctgcctaatgttctg
gctctccgggaagctctgcacaaagccaaagagtggacagcaagagtggaggccatccag
aatggcaccagttatgcgtacctggatcagctggaggctctgctagcgaggggccgctcc
attcctgtgcgtctggacgccctgccgcaggtggaatcccaggtagcttcagcacgagct
tggagagagaggacagcgcgcacctttcttaagaaaaactccacctacacgctgctacag
gttctgagtccccgggctgacattggtgtgtacggcagcagcagaagcaagcgcaggcga
gccaaagagctgctggagaaagagcgtggtgcggagccggagagcctgagcgacctggat
gaagccgcagacgaggagcgctcaccctctgccgtggtggctgcctttaaggctcaggag
cagcaggaggcagaagccatgcactcgctacgggccgccaacttggccaagatgagcatg
gccgagcgcattgacgaggtccgcttctgcctgtgccgcaagacggcgggaggtgtaatg
ctacagtgcgagctgtgcaaagactggttccatggcgcctgtgtgcccctgcccaaagca
ggctcgcagaagaagctgacaacaggcagcagctggcagagtgctagcaaagagtcaaag
tttctgtgcccattatgccagcgttcgaggcgaccccgactcgagaccgtcctttcgtta
ttagtgtccctgcagaagcttcccgtgcggttgcctgagggcgaggcgctgcagtgtttg
acagagcgtgccatgagctggcaggaccgggcgcggcaagccctggccaccgacgaactc
tcctctgctctagccaagttgtctgtgctcagccagcgcatggtggagctcgcagcacgc
gagaagaccgagaagatcatcaacgccgagctgcagaaagctgccgccaatccagaccta
cagggacacattcagactttccagcaggccggattcaacagggccacctcaccacggaca
tctctagactatgacgatgaggagacggactcagatgaggacatccgtgagacttacggc
tatgacatgaaggactcgggtgaggtaaagccctacttgttctgtgatgaggagatccct
gtgaagtcagaagaggttgtcagtcacatgtggccggccacgccctctttctgtgctgaa
cacgcctactcctctgcctctaagtcctgcccccagaatccaaccactccaaggaaacag
cccaggaagacgcccctggtgccacgcagtttggagcctccggtgctggagctgtcccct
gctgccaaagcccagctagaggttctgatgatggagggagacctgctggaggtctctctg
gatgaaactcagcacatctggagaatcctgcaggccacacacccaccctcagaggagcgc
ttcctgcaagtggagtcggaggacactcttctggagaagccaatgaagctaaaggtgaag
gaaatggagaagaagagaaagaggaaactggagagagctgagcagcagttacttttggcc
tcgtcaggcgtggaaggccggcccaagtgcaaagacatgaagagggtactcgaggttggt
ggcaaacccaaaaagaagaagctcaagctcagcccggagaagtcacgtgagctgaagcaa
ctggccaagcgcctcgccaaagaggagaaggagaggaagaggaaggagaaagctgcggcc
aaagccgagttcgccaaggagggtctggagaagaagaaggagaagaagatcctagacatc
ccctctaagtacgactggtcaggtgcagaggactccaacgacgagaatgctgtctgtgca
gcaaagaactgccagagaccatgcaaggataaggtggactgggttcagtgtgacggagga
tgtgacgagtggttccatcaggtgtgtgtgggtgtgtcatgcgagatggccgagaacgaa
gactacatctgctcggcttgctcgcgaaaggccggcggagtgatgggagtcaaagtgggt
gtagagactgtggtaatgacgtcagccatgtgtagcacacagactctctcccccctgtac
caagcagaggttcaggagggcagctag

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