Pangasianodon hypophthalmus (striped catfish): 113532643
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Entry
113532643 CDS
T05759
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113532643 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113532643 (supt5h)
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113532643 (supt5h)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
113532643 (supt5h)
RNA polymerase I system
113532643 (supt5h)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
113532643 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF3912
DUF150_C
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
113532643
NCBI-ProteinID:
XP_026779908
LinkDB
All DBs
Position
Unknown
AA seq
1087 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSEAEEVEAEENEEDEGQGSVAGSDKAEEEGEDLEEDEEEYDEE
EEEDDDRPRKKPRHGGFILDEADVDDEYEDEDQWEEGAEDILEKVNAEEAEVSNLDPVAL
DEDHSGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHFYGGSEDLSDDITQQQLLPGVK
DPNLWTVKCKIGEERATAIALMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYIEAYKQTHV
KAAIEGVGNLRMGYWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDY
VEPSQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPPQRLFDAEKIRSLGGEVSHD
GDFMIFEGNRYSRKGFLFKSFAMSAVITDGIKPTLSELEKFEDQPEGIDLEVVTETTGKE
REHNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMG
DHVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHE
WGELVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIH
VKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVT
NFTVGGFAPMSPRISSPMHPGGGGQMQRGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKG
YIGVVKDATESTARVELHSTCQTISVDRQRLTSVGAKRHGGMTSTHGRTPMYGSQTPMYG
SGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDEDYEFS
YDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQ
GSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS
PGGYNPHTPGSNIDQTSSDWVTTDILVRVKDTFLDGGVINQTGVIRSVTGGMCSVYLQDT
EKVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLR
FLGKLEV
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacagtgaggacagcgacttctcagacaaccagagcgagaggagcagtgaggct
gaggaggtcgaggctgaggagaatgaagaggatgaagggcagggaagtgttgctggtagt
gacaaagctgaagaagagggggaggacttagaggaagatgaagaggagtatgatgaagaa
gaggaagaggatgatgaccgtcctaggaagaagcctcgtcatggaggctttatcttagat
gaagctgatgttgatgatgagtatgaagatgaagatcagtgggaggaaggagctgaggat
attttggagaaagttaacgcagaggaggctgaagtttctaacctcgatcctgtagctctg
gatgaggatcattcaggttcccgcagactgcagaacctttggcgagattccagagaggaa
gccctgggagagtactatatgaggaaatatgccaagtcttccggaggagaacatttctat
ggaggatcagaggatctttctgatgacatcactcagcaacagttgctccctggtgtcaag
gatccaaatttgtggaccgtcaaatgtaagatcggtgaggagagagcaactgccattgcg
ttgatgagaaaattcattgcctaccagtgcactgacacaccacttcaaattaaatcagta
gtggctcctgagcatgtgaagggatatatctatattgaggcatataagcagacccatgtc
aaagctgccatcgaaggagttggaaacctgcgaatgggctactggaaccagcaaatggtg
cccattaaggagatgactgatgtcctcaaagtggtgaaagaagttacaaatcttaaacct
aaatcctgggtccggcttaaaagaggcttgtacaaagatgatatcgcgcaggttgactat
gtggaaccaagccaaaatacaatatcactgaaaatgattcctcgaattgacttggatcga
attaaagcaaggatgagcatgaaagactggtttgcaaagagaaaaaagttcaagagacca
ccgcaaagactctttgatgctgagaagatcaggtcacttggaggggaagttagccatgat
ggtgattttatgatatttgaaggcaaccgatatagtcgcaaaggcttcctgtttaaaagc
tttgccatgtctgctgtgatcacagatggcattaaaccaactctttctgaactggagaag
tttgaggatcagcctgagggcattgacctggaagtggtgacagaaacaacaggcaaggag
cgagagcacaacctccaggctggggacaatgtggaggtgtgtgagggtgagctgatcaac
cttcagggaaaaattctcagtgtagatgggaacaagataacaatcatgcccaagcatgag
gacctgaaggaccctctagagtttccagctcatgagttgaggaagtattttcgtatgggc
gaccatgtgaaggtcattgccggacgttatgaaggcgacacgggtcttattgttcgtgtt
gaagaaaactttgtcattctcttctctgatctcacaatgcacgagcttaaggtcttgcct
cgggacttacagctatgctcagagactgcatctggggtggatgcaggaggacagcatgaa
tggggggagctggtacagctggatccacaaactgtgggcgtcattgtccggctggagaga
gagaccttccaggtacttaacatgcatggtaaggtgctaacggtgcggcaccaggcagtg
aatagacgaaaggacaatcgctttgctgtcgccctggactctgagcagaacaacatccat
gtaaaggacattgtcaaagtcatagatggaccacattcaggccgagagggagaaattcgg
catctcttccgggggtttgccttccttcactgtaagaagcttgttgaaaatggaggcatg
tttgtctgtaagacacgccatcttgtgctggctgggggttcaaagcctagagatgtgacc
aatttcactgttggaggttttgctcccatgagtcctcgaattagcagtccaatgcaccca
ggaggagggggtcaaatgcagagaggaggtggtggcggtggaatgggccgtggccgtgga
agacgagataatgacctgattggacagacagtccgtatatcccaaggaccatacaaaggt
tacattggggtggtcaaagatgccacagaatcgacagcaagagtagagctgcactcaacc
tgtcagactatttctgtggaccgccagcgtctgaccagtgttggtgctaagagacacgga
ggaatgacctccactcatggtcggactccaatgtatggttcccagacacccatgtacggt
tcaggctctcgtaccccgatgtatggcagccagacacccctccatgatggaagccgcaca
cctcattatggctcccagaccccgctgcatgatggaagccggacacctgggcagagtgga
gcttgggaccccaacaatcccaacacaccatcaaggccggatgaggattatgagttcagc
tatgatgacgagccctctccgtctcctcagggctatggaggcacgcctaatcctcagacc
cctggctatccagaagtgccctctccacaagtcaatccccaatacaatccgcagacccct
ggaactccagcaatgtacaatacagaccagtactctccatatgctgcaccgtctccacag
ggctcttaccagcctagccccagtccgcaaagttatcaccaggtggccccaagtccagtg
ggttaccaaaacacccactcaccggccagctaccaccccacaccgtcacccatggcatac
caggcaagtccgagccccagcccggtaggctatagccccatgactcctggggctccatcc
ccaggcggctacaaccctcacacccctggctcaaacattgaccagacctccagtgactgg
gttactacagacatcttggtgcgtgtcaaggacacatttctggatggaggagtcatcaac
cagacaggcgtcatccgcagtgtgactggtggcatgtgctcagtctatctgcaggacaca
gagaaagtggtcagcatctcgagtgaacacctagagcctgtgactccgaccaaaaacaac
aaggtgaaggtgattttgggagaagacagagaggccaccggtgtcctgcttagtattgat
ggagaggatggcatcgtccgaatggaactggatgagcagctcaaaattctcaatctccgc
ttccttggaaaactggaagtgtga
DBGET
integrated database retrieval system
