Pangasianodon hypophthalmus (striped catfish): 113532781
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Entry
113532781 CDS
T05759
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04270
Vascular smooth muscle contraction
phyp04625
C-type lectin receptor signaling pathway
phyp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
113532781
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
113532781
09153 Circulatory system
04270 Vascular smooth muscle contraction
113532781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113532781
Membrane trafficking [BR:
phyp04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
113532781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PLN_propep
Motif
Other DBs
NCBI-GeneID:
113532781
NCBI-ProteinID:
XP_026780207
LinkDB
All DBs
Position
Unknown
AA seq
1343 aa
AA seq
DB search
MSDTQPTLTDRFSKKVIRTSSILSRDHPPDKKPKSDKASVPPAQDFDSTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHVEVVKLIKSG
SYVALTVLGRPPGLPQIPLSEVDLNLESLEDNGASSVSFPHSPRQIRSKRDYKEENSLLH
SLRVDNIEKKLTKERQEFQDMKEEYVKNPTLRLLRDIQEAKRNTHRAAQDGLPVGDGEGG
GVVDVAQASSDGLWSPALHRHHSASPKTAGQKDSNSPKSTQQDSPNSCSSPENADTSDLD
LHLHPGVKIASSRLASQIIGAEDDYFESEHEQEQVNVQCNCFQSLELLKSRPAHLAAFLH
HVVSQFDPAPVLCYLYAELYKQTNSKETRRIFMDFFTFFIDRGANLKVTVPESISFELER
RRPELIPEELHRQYVQTMQDTLLPEVNRILEDFRQKHSMGLTLAEGELAHLDTEQLKDAT
ALERERSCAENILAKIDDILLSSLAAEEEKCTTIQYVIYFYMKHLGVRGKEQRNLESKRV
RINFLPKIKKSSKLEKEVEEKVKKPRFNILGPQRRPSRIETTPVGRTVDGSKPRPQKQLS
QPVMGKGEMIDGGRLRGSQSSEGSDLIQNPTVISNIPPNSPVSDTAVRDIDCSVNSSFML
QRLSDGMQVGEGLDMTYPPCDYTPYNVEHLDEDRDGDRFVDVGTPKLSRRLEETLSEDDG
VYSDMDPPNWQQLVKMEVLAELTPQEIKRQEVINELFYTERAHVRMLKVLDNVFYQKLFR
DNILPPADINNIFSNLEEIIQLHVMISEQMAAIRKRNETSVVDQIGDDLLSWFSREEEEK
MKHAVGTFCSNQPFALELIKSRQKKDQRFLTFMHEAESNRMCRRLQLKDMIPAEMQRLTK
YPLLLENISKYTGDPEEKEKVRKAADCCRKILNHVNQAVKESENKQHLEDYQRRLDLSSL
KQSENPLISEFKNLDLTKRKLIHEGPLTWKLNKDKTVELYTLLLEDILVLLQKQDEKLVL
KCHSKNRAGSADTQHIFSPVIKLNTVLVRSVATDNRSFFVLSMSDNGAQIYELMAQTVSE
QRVWQRHIIQRAEAMKSRPHSVIPLPQSAGERNGVGVGKLTKAPEREFASSAQASGKACD
AVSDRASNNEEQEQTRAHGNDESCYPEPELLDGCDTDSPSSSCRADEALKTLAALKQVLV
TQLMAQNDGERMGRRLLRTTSLRTSCRTQDASSGDTGFFEGTEDYAGYMVLEGSGGSESS
TDDNVQYRRKELGLSRGCAADSGISLRFSSSSAESLCGISRQVLTYLRSLQANLNHLKEV
ESRYYLLRQKQESADTGRNKDKK
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagccaacactcactgacaggttttccaaaaaagtaatcaggaccagt
agcattctcagcagagatcaccccccggacaaaaagcccaaaagtgacaaggcttccgtt
cctccagcacaagactttgactctacagggctggttcagagatgtgtcatcattcagaaa
gatgagaacggttttggcctaacagttagtggagacaaccctgtgtttgtgcagctcgtc
aaagaggatggagctgctatgcgtgcaggggttcagactggggacaggatcattaaggtc
aatggcactttggtgacacattcaaaccacgttgaagtggtgaagttaatcaaatcgggc
tcctacgtggccctcactgtgttgggccgaccacctggattaccccagatccctctttca
gaggttgatctgaacttagagtcactggaggataatggggcatcctcagtctctttccca
cattctccacgacagatccggagcaagcgggattacaaggaagagaacagtctcttgcac
agcctgagagtggacaacatagagaagaagctgactaaagaaagacaggagttccaggac
atgaaggaagagtatgtcaagaatcccaccctccggctactgagggacatccaggaagcg
aaaagaaacacgcacagagctgcacaggatggcctccctgttggagacggtgagggtggt
ggtgtggtggatgtggcccaggccagttcagatggcttgtggagccctgccctgcatcgc
caccactcagcttcccctaagactgctggccagaaagactcgaacagtccaaagagcaca
caacaagacagccccaactcatgctcttcacctgagaatgcagacacctctgacctggac
ttgcatctccatcccggtgtgaaaattgcttcctcccgtcttgcctctcagattattgga
gctgaggatgactactttgaatcagaacacgagcaggagcaggtgaatgtgcagtgtaac
tgtttccagagtttggagttgcttaagagtcgacctgcccaccttgcagctttcctgcac
catgtggtgtcccagttcgaccctgctcctgtgctttgctacctttacgctgagctctac
aagcagaccaactcaaaagaaaccaggcgcatctttatggacttcttcacctttttcatt
gacaggggggctaatttaaaagtaactgtgcctgaatctatctctttcgaacttgagcga
cggaggccagagctgattcctgaggagttgcacagacaatatgttcagacaatgcaggac
acacttctccctgaagtgaacagaattctggaggacttcagacagaagcacagcatgggt
ctgaccttagctgagggagagctagctcatctggacacagagcagttaaaagatgccact
gctctggagagagagagatcctgtgctgagaacatcctggccaaaatagatgacattctg
ttgtcctcactagctgcagaagaggaaaagtgtaccactatacaatacgtgatctacttc
tacatgaagcacctgggtgtgagaggcaaagagcagcgtaacctggagtccaaacgtgtg
cgcataaatttcctgcccaagatcaagaagagcagcaagctggagaaagaagtagaagaa
aaggtgaagaagcctcgtttcaatatcttagggcctcagcgtcggccaagccgcattgaa
acaacacctgtaggtcgcactgtggatggaagcaagccaaggcctcagaagcagctctca
cagccagtgatgggaaagggtgagatgatagatggtgggcgtttacggggaagccagtcg
agcgagggctcagacctcatccaaaaccccacagtcatcagcaacattcctcccaacagc
cctgtttcggatacagccgtcagagacatagactgcagtgtgaactcatccttcatgctc
cagcggttgagtgatggtatgcaggttggggaagggctggacatgacataccccccatgt
gattacactccctacaacgtggagcatcttgatgaggacagagatggagacagatttgtg
gatgtgggcacacctaagctgagcagaaggctagaggagacattgagtgaggatgatggt
gtttactctgacatggatcctccaaactggcagcagcttgtgaagatggaggttctagct
gaattgaccccccaggagatcaagagacaagaagttattaatgagctgttctacacggag
cgtgcacacgtacgcatgctgaaagtcctggacaatgtcttctaccaaaagttgttccgt
gacaacatattaccacctgcagacatcaacaacatcttcagcaacctggaggagatcatc
cagctccatgtgatgatttcggagcagatggcagccatacgcaagaggaatgaaacgtca
gtggttgaccaaattggagacgatttgctgtcttggttcagcagagaagaggaggaaaag
atgaagcatgcagtaggcaccttctgcagcaaccagccctttgctctggagctcatcaag
agccggcaaaagaaggaccagcgcttcctcaccttcatgcacgaggcagagagtaatcgg
atgtgccgaaggctgcagctgaaggacatgatccctgctgagatgcaaagactcaccaag
taccccttactgctggagaacatctccaaatacactggtgatccagaggagaaagaaaag
gtgaggaaagcagctgattgttgtcgcaagatcctcaaccacgttaaccaagcagtgaag
gagtcagaaaataaacagcatctggaggactaccagagacgcctggacctctcctctctg
aagcagagtgagaatccactcatttccgagtttaagaatctagatcttaccaaaaggaag
ttgatccatgaaggtccactgacctggaaactgaataaagacaagactgtcgagttatac
acactgctccttgaggacatcctggtgttgttgcagaagcaagacgagaaactcgttctg
aaatgccacagcaagaaccgtgcaggatcggctgacacgcagcacatcttcagccctgtt
attaagctcaacactgtactggtgcgctcagtggcaacggacaacaggtccttctttgtg
ctctccatgtcggataacggagctcagatctatgaactgatggcccagacagtgtctgaa
cagagagtatggcagaggcatatcattcagcgagcagaggcaatgaagtccaggccacac
agcgtcattcctttgcctcagtctgcaggagagagaaatggagtcggagttggtaaactt
accaaagctccagagcgtgagtttgctagcagtgctcaggcctcaggtaaagcctgcgat
gcagtgtctgatcgtgcctccaataatgaggagcaggagcaaactcgggcacatggaaat
gatgaaagctgttatccagaaccggagctgctggatggctgtgacacagactctccatcg
tcttcctgcagagccgacgaagctctgaaaaccttggcagctttaaagcaggtgctggta
actcagctgatggcccagaacgatggggagcggatgggccggcgtctcctcaggacaaca
tctttgcgcacatcatgcaggactcaggacgcctcctcaggggacacaggtttttttgaa
ggcactgaggactatgcaggctacatggtgctggagggctctggaggctctgagagcagc
actgatgataatgttcagtacaggaggaaggagttgggtctttcccgtggctgtgctgct
gactcgggtatcagcctcaggttttcatcgtcctcagcagagagcttatgcggcatcagc
agacaggttctcacgtacctgcgctctctgcaagccaacctcaatcacctcaaggaggta
gagagcagatattatctgttaagacaaaaacaagaatcagcagacactggaaggaacaaa
gataagaaatag
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