Pangasianodon hypophthalmus (striped catfish): 113532805
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Entry
113532805 CDS
T05759
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06524
integrin alpha E
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04518
Integrin signaling
phyp04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04518 Integrin signaling
113532805
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
113532805
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113532805
04090 CD molecules [BR:
phyp04090
]
113532805
Cell adhesion molecules [BR:
phyp04515
]
Integrins
Integrin alpha subunits
113532805
CD molecules [BR:
phyp04090
]
Proteins
113532805
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_CoxE
ARCH_RTEL1
DUF4604
Motif
Other DBs
NCBI-GeneID:
113532805
NCBI-ProteinID:
XP_026780251
LinkDB
All DBs
Position
Unknown
AA seq
762 aa
AA seq
DB search
MFAAVLFIIGMYTAVGFNIFTKPVSKFTNDDQSNIQSKDRVFVPSPTSGDVFRCAEKNCS
RINVAGVTKGLRPAVSVTSSWREDKEQLHVCNQVRTINSSTENFNGNCTHISDHQEKSKI
YPNKLVLQLLEQKAMNSNNNNNNKNQGSQTSLYRDHWRKRRALQNDPSTDTDEEDEDAGT
EIAFVLDGSGSIEQEDFERAKDFIYNVMKNVWTTCFSCKFAVVQYGRDIRTELSLNENNE
RLRALDKVKNIKQIHAITKTASALYHVLTDVFVPQSGSKENAKKKIILLSDGEMAGDERN
LTEVLNMPQMEGIVRYAIGVGPEVLNKTQAIKEMTEIAGSEDRFFSVCNYAALENILSSL
EKSIIRIEDAGMEITFVLDGSSSIDPQDIESAKDFISNVMKNVWTTCFSCKFAVVQYGRD
IRTELSLQENNDHLRALDKVKSIKQIYGITKTASALYHVLTDIFVPQNGSKENAKKMIIL
LSDGEMAGDERNLTEVLNMRQMEGIVRYAIGLGPEVLNKPQAIKEMMEIASSEDRFFKVS
NYAELKNILSSLEKNIIRIEDAGTEIAFVLDGSGSIEPPDFERAKDFISNVMNNVWTTCF
SCKFAVVQYGRDIRTELSLKENNEHLRALDKVKNIKQIHAITKTASALYHVLTDVFVPQS
GSKENAKKMIILLSDGEMAGDERNLTEVLNMPQMEGIVRYAIGLGPEVLLKRNAIQEMIE
IAGGEERFFRVSSYAALEDILSTLEKSILRSAGRGIQLFCHS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcagctgtgctgtttataattggcatgtacacagcagtgggattcaacatattc
acaaagccagtgagcaaatttacaaatgatgatcaaagcaatattcaatcaaaggacaga
gtttttgttccttctcctacttctggagacgttttcagatgcgcagagaaaaactgttct
agaataaatgttgcaggagtaacgaaaggcctgagaccagctgtgtctgtaacatccagt
tggcgtgaagataaggagcagcttcatgtttgtaaccaagttcggacaattaattcatca
actgagaatttcaatggaaactgtacacacatatctgatcatcaggaaaagagtaaaatt
taccccaataagttggttttacagctgctggaacaaaaagccatgaacagcaacaacaac
aataacaataaaaaccaaggcagtcaaacatctctttatcgagaccactggaggaagaga
agagctctacagaatgaccctagcactgatacagatgaagaagatgaagatgcagggacg
gagatcgcttttgtgctggatggttctggtagcattgagcaggaggattttgaaagggcc
aaagactttatttataatgtgatgaaaaatgtttggacaacatgtttcagttgcaagttt
gcagtagtgcagtatgggagagatataaggacagaactctctctgaatgaaaacaatgaa
cgtcttagagccttggataaggtgaagaacataaaacaaattcatgcaatcaccaagaca
gcttcagccctctaccatgtcctcacagacgtttttgttcctcaaagtggatcaaaagag
aacgccaaaaaaaagattattctactgtctgatggagagatggcgggagatgaaagaaac
ctcacagaggtattgaacatgccacagatggaggggattgttcgctatgctataggggtg
gggccagaggttctgaataaaacacaggcaataaaagagatgacagaaatagctggcagt
gaagatagatttttcagtgtttgtaattatgctgctttggaaaacattctctcttctttg
gaaaaaagcataattaggattgaagatgcagggatggagatcacttttgtgctggacggc
tctagtagcattgacccgcaggatattgaaagtgccaaagactttattagtaacgtgatg
aaaaatgtttggacaacttgtttcagttgcaagtttgcagtagtgcagtatgggagagac
ataaggacagaactctctctgcaagaaaataatgaccatctcagagccttggataaggtg
aagagcataaaacagatttatgggatcacaaagacagcttcagccctctaccatgttctc
acagacatttttgttcctcaaaatggatcaaaagagaacgccaaaaaaatgattattcta
ctgtctgatggagagatggcaggagatgaaagaaacctcacagaggtattgaacatgcga
cagatggaggggattgttcgctatgctatagggctcgggccagaggttctgaataaacca
caggcaataaaagagatgatggaaatagctagcagcgaagatcgatttttcaaggtttct
aattatgctgaattgaaaaacattctctcttctttggaaaaaaacataattaggattgaa
gatgcagggacggagatcgcttttgtgctggacggctctggtagcattgagccgccggat
tttgaaagggccaaagactttattagtaatgtgatgaataatgtttggacaacatgtttc
agttgcaagtttgcagtagtgcagtatgggagagacataaggacagaactctctttgaaa
gaaaataatgaacatctcagagccttggataaggtgaagaacataaaacaaattcatgca
atcaccaagacagcttcagccctctaccatgttctcacagacgtttttgttcctcaaagt
ggatcaaaagagaacgccaaaaaaatgattattctactgtctgatggagagatggcagga
gatgaaagaaacctcacagaggtattgaacatgccacagatggaggggattgttcgctat
gctatagggctggggccagaggttctgctgaaaaggaatgcaatacaagagatgatagag
atagctggtggcgaagagagattcttcagggtttccagttatgctgccttggaagacatt
ctctctactttggaaaaaagcatactcaggtctgcaggaaggggaatacagctattctgc
cattcctag
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