Pangasianodon hypophthalmus (striped catfish): 113533018
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Entry
113533018 CDS
T05759
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04137
Mitophagy - animal
phyp04140
Autophagy - animal
phyp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
113533018
04137 Mitophagy - animal
113533018
04148 Efferocytosis
113533018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113533018
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
113533018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
113533018
NCBI-ProteinID:
XP_026780603
LinkDB
All DBs
Position
Unknown
AA seq
634 aa
AA seq
DB search
MTTTVAKRPSSEQRKVRLRDAARCRRSQETEVFYELAHSLPLSRRITSHLDKAGIMRVTL
SYLRMRHLVHSSWTKAPAAAEEEEDPTDAFYQQALAGFILVLSDDGDMVFLSDNVSKFIG
ITQLELLGQSVYDYVHPCDQEELRDLLTTKPGLFKKKSESFTECNFFLRLKSTLTSRGKT
VNIKSATWKVVHCTGHMKTLNQEGEGSSPAGSYMTLLCEPIPHPSCVEFPLDSSTFLTRH
NMDLHFNQCDGRVTELVGYHPGELIGRSAYDFFHALDFDHLTRSLHVLLSKGQVCTSRYR
FLAKNGGFVWTETQATVLYNSKTSQPEAVVCLNFILSAVEEADTVFSIEQTRSELTQDKL
SVIEMEDSEDEMSSSSSSSSSSSELFHSLKDSPEDLLQLAPAEEDTIVPLTEHSELYFGP
PSSPNTVPKCPKELCTPKLRQLLSPIFDSTGPNSPDLSSGDEVSMDTGEVEKFFANKPEE
TQKKPMEDLDDMDLDMLAPYISMDEDFQLTFLPKVPQSETQTAEVPTTASKKRGLDEEED
IPSLTSNWEKRRKNCPIEEEFLLSHSSLMDMQVAGGLEELEPDRWKQSQLLTDRDPVLGG
TQALCDTAALMRDSFSSQPPDLMARLTGTISTLA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgacgactactgtggctaaaaggccgagctcagagcagaggaaggtgcgtctgcgtgat
gcagctcgctgtaggcggagtcaggagacggaggtgttctatgaacttgcccactcgttg
cccctgtcacgccgcatcacctcccacctagacaaagctgggatcatgagggtgaccctc
agctacctgcgtatgcgccacctcgtccactcttcatggaccaaggcaccggcagcagcg
gaggaagaggaggatcccactgatgcgttctaccagcaggcgcttgctggctttatcctg
gtgttgagcgacgacggggacatggtcttcctctctgacaatgtcagcaagttcataggt
atcacgcagctggagctgcttggccagagtgtgtacgattatgtccatccatgtgatcaa
gaggagctgagagaccttcttaccaccaaacctggactctttaagaagaagtctgagagt
tttacagagtgcaacttcttcctgagactgaaaagcacactaacgagccgcggcaaaaca
gtgaacatcaagtctgccacctggaaggtggttcactgcacaggccacatgaagacatta
aaccaggaaggggaaggctcctcccctgcagggagctacatgaccctgctgtgtgagccc
attccccacccgagctgcgtggagttccctctggacagcagcaccttcctcacacgccac
aacatggacctgcacttcaaccagtgtgacggccgggtgactgagcttgttggataccat
cccggtgagctgattggccgatctgcctatgattttttccatgcacttgactttgatcat
ctgacaaggagcttgcatgtcttgctctccaaaggtcaggtgtgcactagccgttaccgc
ttcctggctaagaacggtggatttgtttggactgagacccaggccacggtgctctacaac
agcaagacctcgcagcctgaagctgtggtgtgcctcaacttcatcctcagtgcggtggag
gaggcagacactgtgttctccattgagcagacgcgcagtgagttgacgcaggacaaactg
agtgtaattgagatggaggactcagaggatgagatgagtagcagcagcagcagcagcagc
agcagcagtgagcttttccacagtttgaaggacagtccagaggatctgctgcagctggca
ccagctgaagaagataccattgtaccgctgacagagcatagcgagttgtacttcggccca
ccatccagccccaacacagtgcccaaatgtccaaaggagctgtgtacccccaaactccgc
cagctcctctctcccatattcgatagtaccggccccaactcccctgatctgagctcaggt
gatgaggtttccatggacactggtgaggtggagaagttctttgccaacaagccagaggag
actcagaaaaagccaatggaggatctggatgacatggatctggatatgctggcaccctac
atctccatggatgaagatttccagctgacgttcctgcccaaggtgccccagtcagagacc
cagactgctgaagtaccaactacagcttctaagaaaagaggtctggatgaagaggaagac
attccatctctaacatccaactgggagaagagacggaagaactgccccatagaggaggag
tttctgctctcacattcctcgttgatggacatgcaggttgcaggtggattagaagagctg
gagcctgatcgttggaaacagagtcagctcctgacagacagagaccctgtgcttggagga
acacaagcactgtgtgatacagcagctttgatgagggattctttctcatcacaaccacct
gatttaatggctcgtttaactgggactatatcaacacttgcctga
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