Pangasianodon hypophthalmus (striped catfish): 113533024
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Entry
113533024 CDS
T05759
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein isoform X1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03440
Homologous recombination
phyp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113533024 (brip1)
03460 Fanconi anemia pathway
113533024 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113533024 (brip1)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113533024 (brip1)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
113533024 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
113533024 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
DEAD
DUF6399
HBB
ARCH_RTEL1
Motif
Other DBs
NCBI-GeneID:
113533024
NCBI-ProteinID:
XP_026780614
LinkDB
All DBs
Position
Unknown
AA seq
1325 aa
AA seq
DB search
MAAETVEYTIGGVKINFPCKAYPSQLAMMNSIVRGLNHGQHCLLESPTGSGKSLALLCSA
LAWQHAQYAKSDQEGGSPSCDVKKPYVTTPCQCVCHSRARCSSTSFSTTASKPAVIDLTG
QDPAAQATTPPRAEENQAKRSTLSSRLSEKFQASFTTQGESNDEDFKPDKKRIRAPAADQ
KQSRKRRCLEQGMVFDDDEEVERADPGTQNWTVELSSQAKAEGSLPPAECCSPVPCSLCA
CASLGEGQKTGEKVKDKDKEGNGKKAVPKIFFGTRTHKQITQVARELKRTLYSTVPMTIL
SSRDHTCVHPEVVPHANRNERCKELLEAKNGQLCRFYHNVHKMREQRTLQWVHGLHQAWD
IEELVSLGSKLRSCAYYAARELMQDAKIVFCPYNYLLDPLIRESMDINLRGQIVVLDEAH
NIEDCARESASFTLNQAQLREAREDLDAMVTYNIRRSHHESLLAFCCSLLNWIQESSSTL
QDRDYETAYKVWTGKEVLDIFHGLGITADTFPVLQKHFEAVLEKEERVGLVNGREDTVQV
PTISSSTQTVLKSLFMVLGFLFRQNCRFADDYRVALQQSYVWTTQEDVPDAQGFLARPRR
RRQNVRTKTLVHTLSFWCLNPAVAFSDLSTAVHSIVLTSGTLSPMGSFSSELGLKFSIQL
EASHVISKSQVWVGTIGAGPQGRRLCATFQHAETFTFQDEVGALLLKVCQTVSRGVLCFL
PSYKMLDKLRDRWMNTGLWEKLEERKAVIAEPRGGAKSDFDELLQTYYKAIKQSGARDGA
LLIAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCKSRGLLPGGR
WYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRANPNKYITGLSKWVRQLVMHHDSFT
SALHSLVSFSRSRQGEVESHTEELAQTNPDSPRTQASESPPQLPKPQQCLSSEGQITIPS
VSHPSEAGDQKPSQHQSELLIPQGNVPQILPKPQTKPTLFTSTPVSSRFRTPIFQSKDSR
KDLDQCVNSAVINKDTVSAPDQAVKEQTEVVPENKPNESPPDPPLQPLALSPVETPPYCI
SNQETNIAGPEDVEEEDQTIFYTPELFEGEDEESAAAAIEEDDESAAAAIEEDDESAAAA
IEEDEESAAAATEEDEESAAAAIEEDEESAAAATEEDEESAAAAIEEDEESATAATEETP
LQIEQLLYTIEKMADRQPGGEFRSEKDQTRMCASSSDVKGTATFPERDFFSPDGDCVLSE
SVAEQAGVSCSIGSEDRATQQQHNTSSKSRRLSRSRQKASSREAGKLTTNFTCLSGESAV
DHCNR
NT seq
3978 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggagacagtagagtacaccataggaggagtgaagataaacttcccctgcaaa
gcatatccctctcaacttgccatgatgaactctattgtccgtggcctgaaccatgggcag
cactgcttactggaaagccctactggcagtgggaagagcctcgcgctgctctgctcagcc
ttggcatggcagcacgcgcagtacgctaaatctgaccaggagggaggaagcccttcatgt
gatgtaaaaaagccctacgttactaccccatgtcagtgtgtgtgccacagcagagctcgt
tgctcatccacttccttcagcactacagcgtccaaaccagctgtgattgaccttactgga
caagatcctgctgcccaagccaccacacctccgagagcagaggaaaatcaagccaagaga
tccactctgtcatccaggctttctgagaaatttcaggcttccttcactacacagggagaa
tcaaatgatgaagactttaagcccgataagaagcggattcgggcacctgctgctgatcag
aagcagagcaggaagcgaagatgtcttgaacaaggcatggtgttcgatgatgatgaggaa
gtggaaagggctgatcctgggactcagaactggactgtggagttgagcagtcaagccaaa
gctgaaggcagcctgccaccggctgaatgctgttctcctgtaccttgttccctgtgtgct
tgtgcgagcctcggagaagggcagaagacaggtgaaaaagtcaaggacaaagacaaagag
ggcaatgggaagaaagctgtccccaaaattttctttggcacacggacacacaaacagatc
actcaagttgcacgagagctgaagcggacgctgtactccactgtgcccatgaccatccta
tccagccgagaccatacgtgtgtccaccctgaagtggtaccccacgccaaccgcaatgaa
cgctgcaaggagctgctcgaggccaagaatgggcagttatgccgattctaccacaatgtg
cataagatgcgggagcagagaactttgcagtgggtgcatgggctgcaccaggcctgggac
atagaagagctggtcagtctgggcagtaagctacgctcctgtgcctactatgcagcccgg
gagctcatgcaggatgctaagattgttttttgcccgtacaactacttgctggaccccctt
atccgggagagtatggacatcaatctaagggggcagattgttgtgctggatgaggctcat
aacattgaggattgtgcccgcgagtctgccagcttcaccctaaaccaggctcagctgcgg
gaggcccgtgaggatcttgatgctatggtgacatataacatccgccggagtcaccatgag
tctcttctggccttttgctgcagcctgctcaactggatacaagaaagctccagtactttg
caagacagggattatgagactgcctataaggtgtggactgggaaggaagttctggacatc
ttccatggtcttggcataacagctgacacatttcccgtgcttcagaagcactttgaggca
gtgctggagaaggaagagcgggttgggctggtgaatgggagagaggacacggtacaggtt
cccaccatcagctccagcactcagactgtgctgaagagcctttttatggtgttgggattc
ctgtttcgacaaaactgcaggtttgcggatgactaccgtgtggctttgcagcagagttat
gtttggactacccaggaggatgtgcccgatgcccagggctttcttgcccggccacgccgc
cgccgccagaatgttcgcactaaaacccttgtgcacacactcagcttctggtgccttaac
cctgctgtggcattttctgatctcagcacagcagtacacagtatagtgctcacttctggt
accctctcacccatggggtccttctcttctgagctgggcctcaaattctccatccagctg
gaggccagccatgttatcagcaaatctcaggtatgggtaggcaccattggagcaggtcct
cagggccgtaggctgtgcgccacattccagcacgccgagaccttcaccttccaggatgag
gtgggcgcactgctgctgaaagtgtgccagactgtgagccgaggagtgctctgcttcctg
ccatcctacaagatgctggataagctgagggatcgctggatgaacacaggcttgtgggag
aagctggaggagaggaaagcagtgattgcagagccacgtggaggagccaagagtgacttt
gatgagctgctacaaacctactacaaggccatcaaacaaagtggagcccgagatggggca
cttctgattgcagtttgcagaggaaaagtgagtgagggactggattttactgatgacaat
gccagagcagtggtcactattggcattcccttccccaacatcaaagacctgcaggttgaa
ttgaagatgaaatacaatgaccagcactgtaaatccaggggccttcttcctggaggcaga
tggtatgagatccaggcctaccgggccctaaatcaggcgttgggaaggtgtattcgtcat
agaaatgactggggtgcacttattttagtggacgaccgttttagagccaaccccaacaag
tatatcacaggcttgtccaagtgggtgcgtcagctggtgatgcatcatgacagctttact
agtgccttgcattctttggtgtcgttctcccggagccggcagggagaagtagagagccac
actgaggagcttgctcagactaaccctgactcccccaggactcaggcatctgagtcccct
cctcagcttccgaaaccgcagcagtgcctgagctctgagggtcagattaccattccctct
gtcagccacccttcggaagcaggtgaccagaagccttcacagcatcaatcagaattacta
attccacagggtaatgtgcctcaaatccttccaaaaccacaaacaaagcccaccctgttc
acctccactccagtcagttctcgattcaggacccctatcttccaatctaaagactccagg
aaggacttggaccagtgtgtaaattcagcagtcattaataaggacacagtttctgcacct
gatcaggcagtgaaagagcagactgaagttgttcctgagaacaaaccgaatgagagtcca
cctgaccctcctcttcagccactagccctgtcccctgttgagacacctccatactgtatt
tccaatcaggaaacgaatatagcaggacctgaagatgtcgaagaggaggaccagactatc
ttctacacccctgagttgtttgaaggagaagatgaggagtcagccgcagcagctatagag
gaagatgatgagtcagccgcagcagctatagaggaagatgatgagtcagccgcagcagct
atagaggaagacgaggagtcagctgcagcagctacagaggaagatgaggagtcagccgca
gcagctatagaggaagacgaggagtcagctgcagcagctacagaggaagatgaggagtca
gccgcagcagctatagaggaagatgaagagtcagctacggcagcgacagaggaaactcct
cttcagatcgaacagcttctttacaccatcgaaaagatggctgatagacagcctgggggg
gagttcaggtccgagaaggaccaaacaaggatgtgtgctagctctagtgatgttaaaggg
actgctacgtttcctgaaagagactttttttctcctgacggagactgtgtgttgtctgag
agcgtagcagagcaggcaggggtgagctgtagtataggcagtgaggacagggccacacaa
caacaacacaacactagcagcaagtcacgtaggctctccaggtccaggcagaaagcatcg
agcagagaagcaggtaaactcactaccaacttcacctgtctctcaggggagtcagctgta
gatcattgcaatcgatga
DBGET
integrated database retrieval system
