Pangasianodon hypophthalmus (striped catfish): 113533330
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Entry
113533330 CDS
T05759
Symbol
dcaf1
Name
(RefSeq) DDB1- and CUL4-associated factor 1 isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
phyp01001
]
113533330 (dcaf1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113533330 (dcaf1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
113533330 (dcaf1)
Protein kinases [BR:
phyp01001
]
Serine/threonine kinases: Other
Other
113533330 (dcaf1)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
113533330 (dcaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WD40
LisH
Beta-prop_WDR19_1st
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Motif
Other DBs
NCBI-GeneID:
113533330
NCBI-ProteinID:
XP_026781196
LinkDB
All DBs
Position
Unknown
AA seq
1540 aa
AA seq
DB search
MASAVEGSVDSKAELTALLEQWEREQQGNTQDLVNILTKISELVERETEEYHKADPDPFD
DRHPGRANPECMLGHLLKILFKNDDFMNALVNSYVMTSREVPLNTAACRLLLNIMPGLET
AVVFQEKEGIVERLFKWAREAEEPLRIYATGLLAGAMENQDIAANYREENSVLVPLMLQR
LRELQEKDAESRKDFKRPSLRKSMEPLLPLDEEAVDGKFSPSPSHIHSENNSFGHESDGA
VSPEPSLTQKCSSRVHSGVRGVMKLAVPHQSESENPGEGAKDFKKRMERENGRKAKQKLN
FSLPEPERSFSELSNSSWSEMSPWVIGNSYHLYPLTAGIEQRLILQYLTPLGEYQELLAV
FMQLGARELLMHYMDLKQTNDVQLTFEALKYLASLLLHKKFAAEFVAHGGVQKLLEIPRP
SMAATGVSLCLYYLAYNQDAMERVCMLPHSLLAEVVSYTLWLLECSHASGCCHATMFFSI
CFSFRAVLELFDNQDGLRRLVNLISTLEILNPEDQGALLSDDEIFSSRQTAKHTCMALRR
YFEAHLAIKVEQVKQSLQRTEGGAPIHPQPYYKPCSYTHDQVVEMVEFLIEHGPVRLYWE
PAEVFHKLSCVQLLLQLISIACDWRTYYGRSDTVRYALDILSILTVIPKTQLLLAENVAV
LDEGGSTISTVGMSIVLVVAEGEVFVNDAEIQKSALQVVINCVCAPDKRISSIGKFISGA
PRRRLPQSHRTSESVLAKMWNVVQSNNGIKVLLSLLTIKMPITDADQIRALACKALVGLA
RSTTVRQIISKLPLFSSGQIQQLMKEPVLQDKRNDHVRFCKYAAELIEQVSGKPLLIGTD
VSLARLQRANVVAQTRITFPEKELLLLIRNHLLSKGLSDTASALTKEADLPMGIHSHSHA
HTSVAPFSQSVSTPPTPTAIPRTPRLANGVAARLGSHASHVPAPSLHLQPRPPTSQPPPP
APPTSSHHSSGSPLVGRIVFSRERPSTYAAGLKKPRVLRQKSDHGAFSQSPAMKKQLDRH
LPSPPALDSIITEYLREQHARCKNPVTTCPPFSLFMPHQCPEPKQRCQAPTNFTARHTRR
VAYPKYGGVDGGCFDRHLIFSRFRPISVFREAEEDESGFMCCAFSARERFLMLGTCTGQL
KLYNVFSGQEEASYSCHSSAITHLEPSRDGSLLLTSASWSYPLSALWGMKSVFIMKHSFL
DDHYVEFSKLSQDRVIGTKEHIAHIYDIQTGQKTLTLNNPDLANNYKRNCATFNPTDDLV
LNDGVMWDVRSAQAIHKFDKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQC
RIVFNNNGTVIYGAMLQADDEDEMMEQQMKSPFGSSFRTFDATDYKPIATIDVKRNIFDL
CTDTKDCYLAVIENQDSINMDTVCRLYEVGRQRLAEEEEDEEDQEDEDQEDEDDDDSDDD
MDDIDTDPLMAELENENNGEEEEEEEDGEQDFSPSDDEEVARLLEEEGEDDDDDDDDDDD
DDDEEDDSEDNEGDVELVMDNTDSSDNSDLEDDIILSLNE
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctgccgtcgaaggcagcgtggactcaaaagcggagctcacagcactgctggag
caatgggagagagaacaacaaggcaacactcaggacctggtcaacatactgaccaagata
tcagaacttgtggagagggagactgaggagtaccacaaggctgatcctgacccgtttgat
gaccgccatccaggacgggcaaacccagagtgcatgctgggacacctgctgaagatccta
tttaagaatgacgactttatgaatgcgctggtgaactcgtatgtcatgacaagcagagaa
gttccactgaacactgcagcgtgtcggctgttgctgaacatcatgccaggcctggagact
gcagtggtctttcaagagaaggagggcattgtagagcgcctgtttaaatgggcccgggag
gctgaggagcccctgagaatctatgctacaggtttgcttgcaggagccatggagaaccag
gacattgctgccaactaccgtgaggagaactctgttctggttcccttaatgctacagagg
ctcagagaactccaggagaaagatgcagaaagcagaaaggacttcaaacggcccagtctc
cgcaagagcatggagcccctgctccctctggacgaggaagcagtagatggcaagttttcg
cccagcccttcacatattcactcggaaaataacagcttcggacacgaatcggatggagcg
gtctcccctgagcccagtctaacccagaaatgcagcagccgagtccactctggtgtcaga
ggggtcatgaaattggcggtgccacaccagtcggagtcggagaaccctggcgagggagca
aaagatttcaagaagaggatggagcgagagaatggcaggaaggccaaacagaagctgaac
ttctcattgccagaaccagagcgcagcttcagcgagttgtccaacagcagctggtcagag
atgagcccatgggtgattgggaacagctaccacttgtacccacttacagcaggcatcgag
cagcgtctcattcttcagtacctcacaccattgggggaataccaggagctgttggctgtg
ttcatgcagcttggcgctcgagagctcctcatgcattacatggatctaaaacagaccaac
gatgtccaattaacctttgaggccctcaagtatctggcctctctcctgctgcataagaag
tttgcggcagaatttgtggctcacggtggggtgcagaagcttttggagatcccgcggcca
tccatggctgccacaggagtctctctgtgtctctattaccttgcctacaaccaagatgct
atggagagggtgtgtatgctaccccactccctcttagcggaggtggtgagttacactctg
tggctgttggagtgttctcatgcctccggctgctgtcatgccaccatgttcttttccatt
tgcttctcgttccgagctgtgctcgagctcttcgacaaccaggatggcctgagacgactt
gtcaacctgataagtacactggaaatcttgaatccagaggatcagggggcactgctgagc
gatgatgagatcttctccagcaggcagacggccaaacacacatgcatggctctgcgccgg
tactttgaagcccacttggccattaaagtggaacaagtaaagcagagtctgcagcgcaca
gagggaggagcacccatccatccccagccgtactacaagccttgctcctacactcatgat
caggtggttgaaatggtggaattcctcatcgagcacgggccagtgcgcctgtactgggag
cctgccgaggtcttccacaaactgtcctgcgtgcagctccttctgcagctcatctccatc
gcctgcgactggaggacgtactacggcaggagtgacacagttcggtatgcactggacatc
ctcagcattctgactgttatcccaaaaacgcagctcctgttggctgaaaacgtagctgtg
ctggatgaaggcgggtctaccatctccacagtaggcatgagcatcgtcctggtggtagcc
gagggtgaggtgtttgtgaatgatgctgagatccagaagtcagctctgcaggtggtgatt
aactgcgtgtgcgcccctgataagcgtatttccagcatcggtaaattcatctcaggagca
ccacgacggcgtcttccccagagccaccgcaccagcgaaagtgtcctggccaaaatgtgg
aatgtggtccagtccaataatggcatcaaggtcttgctctcgctgctgacaatcaaaatg
cccataacagacgccgaccaaatccgtgcgttagcgtgcaaagcattagtgggtttagca
cgaagcaccacggtgcgacagattatcagcaagttaccgctgttcagcagtgggcagatc
cagcagctaatgaaagaacctgtgcttcaagacaaacgcaacgaccatgtacgcttttgc
aaatatgctgccgagctaatagagcaagtatcgggaaagccgctgctaattggcacagat
gtttcattagcacggttgcagcgtgccaacgttgtggcgcaaacacgcatcacgttcccc
gagaaggagttgcttctgcttattcggaatcatctgttgtcgaaaggtctctccgatacg
gcttcagcactaaccaaagaggctgacctgcctatgggcatacattctcattctcacgct
cataccagtgtagcaccattttcacaatctgtgtccacgccccccacaccaactgccatc
ccacggactcctcgcctcgccaatggcgtggcagcacggctaggaagccatgcctctcac
gtgccggctccatctcttcacctacagccccgcccacctacctcacagcccccaccccca
gcccctcccacgtcatctcaccacagcagcggctctcctctcgttggccgaatcgtgttc
tcgagggaacggccatctacctatgccgcaggattgaagaaaccacgtgttttgaggcag
aaatcggaccatggcgcatttagccagagtccagctatgaagaaacagttggaccgccat
cttccttcacctccagctcttgatagtatcataacagagtacctgcgagagcagcatgcc
cgttgtaagaacccggtcaccacgtgccccccgttcagtctcttcatgccccaccagtgt
ccagagccaaagcagaggtgccaggcgcccacaaactttaccgcacgtcacacacgcagg
gtcgcctatccgaaatacgggggggtggatggaggctgcttcgacaggcatctcatcttc
agcaggttcaggccaatctcagtgttcagggaagcagaggaggatgagagcggcttcatg
tgttgcgcgttctcagcacgcgagcgtttcctcatgttgggcacatgcaccgggcagctc
aaactttacaacgtgttcagcggacaagaggaagccagctacagctgccatagttcagcc
atcacacacctcgagccatccagggatgggtctttactgttgacatctgcttcatggagt
tatcctctgtctgccctctggggaatgaaatctgtcttcataatgaaacattccttttta
gatgatcattatgtggaattcagtaagctctcccaggacagagtaataggaacaaaggaa
cacattgcccatatttatgacattcaaactgggcagaagaccctgaccttaaacaaccct
gacctggccaacaactacaagcggaactgcgccaccttcaatccgactgatgaccttgtg
ttgaatgatggggttatgtgggacgtgcgttcagcacaggccatccacaagtttgataaa
ttcaacatgaacatcagcggcgttttccaccccaacggccttgaagtgatcatcaacaca
gagatatgggacttacggactttccatttgctgcacactgtaccagcactggatcagtgc
agaattgtgttcaacaacaatggaacagtcatttatggagccatgcttcaggctgatgat
gaggatgaaatgatggagcagcagatgaagagtcccttcggttcctccttcaggaccttt
gatgctactgactacaaaccgatagcgaccattgatgtgaagaggaacatttttgacctg
tgcactgacacaaaagactgttacctggcagtcattgaaaatcaagattctataaatatg
gacacagtgtgtcgactttatgaagtcggccgacagagactggctgaagaagaagaggat
gaggaggatcaggaggatgaagatcaggaggatgaggatgatgacgactcagacgacgac
atggatgatattgacacagaccccctgatggctgagctggagaatgaaaataatggagag
gaggaggaggaggaggaagatggtgagcaggatttttccccatctgatgatgaagaggtg
gctcgtctcctggaggaagagggcgaagatgacgacgacgacgacgacgatgatgacgac
gacgatgatgaagaggatgattcagaggacaatgagggagatgtagagctagtgatggat
aatacagatagctccgataactcagacctggaagatgacatcatcctttccttgaatgag
tga
DBGET
integrated database retrieval system
