Pangasianodon hypophthalmus (striped catfish): 113533454
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Entry
113533454 CDS
T05759
Symbol
mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113533454 (mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113533454 (mbd4)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113533454 (mbd4)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
113533454 (mbd4)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
113533454 (mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MBD
HhH-GPD
Clr2_transil
BUD22
YhiY
Motif
Other DBs
NCBI-GeneID:
113533454
NCBI-ProteinID:
XP_026781409
LinkDB
All DBs
Position
Unknown
AA seq
405 aa
AA seq
DB search
MIPDKCADQTMAASTEQMDTSLPPGWTRETRQRKQGKTAGRVDTYIISPEGKRFRSRAEL
QKYLVSEESVHLELDAFDFTPKIKAQSQKSNSERPQRKEQKAGRRKAKQTNQTTESHPGV
AVGETQNGGIQIEIETETETEVEEKKNNTEAQMQEINSKEEEQKDIMDETEEASSSVREN
TLPAVPLISVQATSDSEGEDKAEVEEEAEEKEESDEVSDSQKSSPVRNTQNGTNLLSEKR
RTSPYFKRKNDGLSPPKRKAFRKWTPPRSPFKLVQETLFHDPWKLLVATIFLNRTTGKLA
IPMLWQFFERYPSAEVTRNSDWKPLADLMQPLGLNALRAKTIIRFSDEYLTKSWRYPSEL
YGIGKYGNDSYRIFCVGEWREVTPNDHKLNKYHAWLWENHKQLGI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgattcctgacaaatgtgctgaccaaacgatggctgccagtacagagcagatggacaca
tcgctccctcctggatggacaagagagacgagacaacgaaagcagggaaagacagcaggc
agagtggacacttacattatcagtcctgagggtaaacgcttcagatccagggcagaactc
cagaagtacttggtctctgaggaaagtgttcatctggaactggatgcttttgacttcaca
ccaaaaatcaaagcacagtctcagaaatccaactctgaaaggccccaacgaaaagaacaa
aaagcagggaggagaaaagcaaaacagacaaatcaaacgacagaaagtcatcctggggta
gctgtgggagaaacgcaaaatggagggatacagatagagatagagacagagacagagaca
gaagtggaggagaagaagaacaacacagaagcccagatgcaggaaataaacagtaaggaa
gaagaacaaaaagacatcatggacgaaacagaggaagcatccagcagtgtgagagaaaac
acgttgccggctgtgcctctcataagcgtccaggctacatcagacagcgaaggagaggat
aaagcggaggtggaggaggaggcggaggagaaagaagaaagcgatgaagtgagtgacagc
cagaaaagctcacctgtcagaaacacacaaaatgggacaaacttactttcggagaagcgg
agaaccagtccatactttaaaagaaagaacgacggtctcagtcctccaaagcgtaaagcg
ttcaggaagtggactcctccacgttcccccttcaaactggtacaagaaaccttgtttcat
gacccgtggaagcttctggtggccaccatcttcctcaacagaactaccgggaaattggcg
atacctatgctgtggcagttttttgagcgttacccatctgctgaggtaacacgtaacagt
gactggaagccactcgctgatcttatgcagccgctcggtctcaacgccctacgagccaaa
acaatcatccgcttctctgatgagtacctcaccaagtcatggcggtatcccagtgagctc
tatggcatcggcaaatatggcaacgattcctatcgcatattctgtgtgggagaatggaga
gaggtcaccccaaacgatcacaaactgaacaagtatcacgcgtggctgtgggagaaccac
aagcaattaggcatctga
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