Pangasianodon hypophthalmus (striped catfish): 113533558
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Entry
113533558 CDS
T05759
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113533558 (vps13a)
Membrane trafficking [BR:
phyp04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
113533558 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Motif
Other DBs
NCBI-GeneID:
113533558
NCBI-ProteinID:
XP_026781570
LinkDB
All DBs
Position
Unknown
AA seq
3228 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAILRNLEIKENALSQLDIPFKVKAG
HIGRLELKIPWKNLYTQSVEATLDEVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKLKAAEQENPKTEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDSVTNLNSPLSFGVSLQ
NLSLQTADANWKPCLLDEKSKLFFKLVRLDNLFAYWNVNSELYSVHSASEALRRLQQNMA
VQNSIPHDYQFIFRPISANAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMSRNLPYRKYRPDMPVHTNAYQWWRYVITGILEVNVKPSLHMWSWKHIKRHRQ
QVKQYKELYKTKITSKKPAETLLKKLEETEKSLDIFNITLARQQAEMEASKAGLRIYRPG
LKMEEEQSQGWFGWVWNWSGDSSAQTKEVKSGGFDTLMTPAEKAKLYTAIGYSETAVNPN
LPKNFEDMKVQFQLVSMSLSIKESKEKPEIIKLSVIDLRAMLTQRPSAQAIKIAAQLSSF
EVTGVLRNGVAPTLLSPRRVVEEDKPLLSLMFETNPLDAKADQRLHVESQPLEIIYDAMT
VNNMSAFFMPPNDLELDELTNATRMKLEQFRDRTSTGLMYIIETQKVLDLKINLMASYVI
VPQMGVYDPKHNLIILDLGHFQMSSQSRAKLPQLSVGKNTIEDIMSRAYDCFDVQLTSLQ
LLYSKADQNWEKARKLRQSSLHILEPVDLKVVFSRAMVVTDSRMPKFKIFGELCLLSLRI
SDDKVRGILELIDSIPLPESRPSPRTAAPQTTPRVLKPRDTPQLTPRKPAMVDLRSSIIF
DSGSEEDLFFDAPSSPIEDLPFFEASSGSLERSTSVKRKTMVKHDPKKNMTEFLLNFEIN
KLSIQLCRLSAGLEVPVLRLDIDGLGTELKVRTFDMTSYTYLQEICLECSEYMDGENKRV
HLITTRDNTEQDLLMLEYIKADKNAPDFKSVYKNTEQLIKVNFSSLDVHLHTEALLNSMN
FLNGLLPPAKKEEPVEQPAPQQDDEGEGDSEEEKKEESTITKKSSTKKSKFEDVVNLHLR
ADLSCLKVFIRGEKARISEISIEGLVSEVQMKKKSVEILANLKNIVILDCDKDALYKKAV
SVADKDVFSFHMVNYVDATDGDAYTDMQIVDTSVTLTVGCIQVIFVNKFVSSILAFINNF
QEAKDALAEVTVQAAEKAATGVLELAEKSTRISLNVNIKAPVVFLPQSSISTNVIVADLG
LVTVKNHFEIVPCKTHTKIPPILDIMSVALSELKMYRTTFKDGQFQSEIQLLKPVNMDLS
IKRNLSASWYHSIPDNQINAHLKPLSLILSQEDLTVVLRTLNENLSETSDAVPAPKSSDK
AETASTKDSQESGAGTTVVTAAVVEGQKTAKQKSTLKLHFKFDSMTLVLYSSSGSETALL
DSHDEQLKLAEFTLGTISTAVHMFSDSSMKASVKLAECLLDDKRKRVNMITSRMMAMRKG
AEKNVMVEVNYRQGRDGTTLDTVVQDLYLCASMEFLLTVADVFLKAMDQGFSSQPKSSKP
ASTSTKDPAAPAQPVVAKTEMNVMVKNPEIVFVADLSRADAPALVMTTQCELVMKNDAAG
QLMTAAITDLMVVACPFVCGEDESNITTVLQPCQVFFKQTQLPAQPQKIELSMNSLTLKV
SPIIINTVITIQSALTPAAETPEELESPVPPDLWERRDWRDLKLWFLEEEGEEDAQSVAP
LIPQGESLQLRISSICLTLEAGVGHRTVPMLLAKSSFHGDVKNWSTLINLQCHLNMEVNY
YNEILGVWEPLLEPLEDETKDGFRPWTLELKMKKKPVKRTGISDEVDYIVPDYKTVISIN
SKDQLNITLSKCGLNMLSNLGTAFAEAAKQTAECFQKDQAPFVVKNRLGLPVAVLYSEVF
KPIGKKSKDRVAELQDGESLNMDYTLTAADADQFSAMTSLSSKNYIQPTPVGHTAASVIP
LIKVGRGMYSVMHLESGVTRFFVCQIYSNEGSKFVKIRSPFLIINHFSLPFRVFEGSTCL
GVSSPTEEFCVPLGSYRAELTLQPVIEGDEQYEHSESFSYENLSQKPDECVEKTCHHRGD
AARIFKVNMVPVRDTVMSHSTQEEFDQPYVLHLWPPVLLRNLLPYPITYSLMVTGSPSPT
MLKEGHSSQLHTAIMDHSSLELKLLGYLQQDWEAHYQLRSDHDEISFITFQSCRSDEEVD
GEAMKAELDIAVHVKKEVGQVVVAIHSPYWMVNKTGRLLQYKADDIHRKHPKDYDMPLLF
SFKPRNFLQNNKVRLMISDSELSDDFSIDTVGSYGDVKCKGRAKDYLVGVKIDTSSFSLT
RLVTFLPFYMLVNRTKHVIRVCEEGEDDWTEAKPGETATPFWPERDSKKLRVKVDGCQSA
AQAIAFHQPENCLLLLLDSTLGGIIVDVNLTEHSAVIRFSDYHDGAAPFLIINHTKENTL
EFHQSCMERRSSTWGQDTQSNCSQKLEMDELGPDQAVYYTWAEPTGSRVLRWSWGPYSGE
LKNEEDLLMDMNDEGKLFVISFYEGLQRVALFTTERRVYKLLCESERVELAEQEISLSLQ
DMGISLVNNSTSQEVAYIGITSSDVVWETKPKKKSRWKVMSGKDAEMLEQHYKAYTESSP
VDHSILDLENGYQVNLTPNGLDMRILQPYDAPLRRNFLPALKVEYSVSARQKAYRVQINR
VQIQNQLPGAIFPFVFYPIKPPKSVRMDSEAKPFTDLSLITRAAGHSDILRIKYFKVLIQ
EMDLRLDLGFLYAILDLFTAENAATVTSEQEVELFEKDIEYLKTGLNHVSATDTSPISLY
EYFHISPIKLHLSFSLSSGGEDGNKEKRETEVIPVQSLNLLLKSIGATLTDVQDVVFKLA
FFELTFQFRTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYE
PYQGAIQGPEEFMEGVALGMKALVGGAVGGLAGAASRITGAMAKGVAAMTMDEEYQQKRR
EAMNKQPSGLKEGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAV
TRPTGGIIDMASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKI
ENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTKDPMIVEE
RRLRIEAKERVKSVFHAKEFGKIINFKTPEIAKWVLTKLQDARESLQK
NT seq
9687 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtggtggacgtcctgaacaggtttctcggggactacgtggtg
aacctcgacagctcccagctgaagctgggcatatggggaggtgatgcaattctgcggaat
ctggaaataaaggaaaatgctttgagtcagttggacattccttttaaagtcaaggcgggg
catataggccgcctggaactaaagatcccatggaagaatttgtacacacagtcggtggag
gcgacactcgatgaggtctacttgctcatcgtccccactgccagtataaagtatgatgca
gaaaaggaggagaagcagctgcaggaggctcggcagagggagcttcagaggatcgaggaa
accaaactgaaagcggcagagcaagaaaatccaaagacggaaaagcaggacacctttgtg
gagaaactggtcacgcaggtgattaaaaacctgcaagtgaaaatttccaatattcacatt
cgctatgaagacagtgtcaccaatctgaattcacctctctcatttggagtatctctacaa
aacctcagtcttcagactgcagacgcaaactggaaaccctgcctgttggatgagaaatcc
aagctgtttttcaaacttgtgcgtctggataacctctttgcatattggaacgtgaactcg
gagctgtactctgttcactctgctagtgaagccctgcggcgcctgcagcagaacatggct
gttcagaactccatccctcatgactatcaatttatattccgtccaatatcggccaacgct
aagcttcgtatgaacccccgctcggatgtggacttctcctcaccaaaagtggatctggtt
gtcaacctgcctgaagtggctgtagagctcagcagaccacagtatgtcagcatactggag
cttttgggctctgtggatatgatgtcacgcaatcttccatacaggaagtatcgcccagat
atgcctgtccacaccaatgcataccagtggtggcgttatgtcatcacgggcatcttggag
gtgaacgtaaaaccctccctgcacatgtggtcttggaaacacatcaaacggcaccggcaa
caagtaaagcagtacaaagagctttataagaccaagatcaccagcaagaagcctgcagag
accctgctgaagaaactggaggagacagaaaaatctctggatatttttaatatcacgctc
gcaagacaacaagccgagatggaggcctctaaagctggcttgcggatctaccggcccggg
ttaaagatggaggaggagcagtcgcagggctggttcggctgggtgtggaactggtctgga
gacagcagtgctcagaccaaagaggtcaaatctggaggttttgacacactgatgactcca
gcagagaaagccaaactctacactgccatcggatacagcgagacagctgtcaatcctaat
ctgccaaaaaattttgaggacatgaaggttcagttccagttggtgagcatgtctctgtcg
atcaaagagagcaaagaaaagccagagattatcaaactgtctgtcatcgacctgagagcc
atgctgacgcagagaccctccgctcaggctataaagatcgcagctcagttgtcatcattt
gaggtaaccggtgtcttgaggaacggcgtcgctcccacactgctttctcctcgacgtgtg
gtggaggaagacaagcctctgctcagcctaatgttcgagaccaacccgctggatgccaag
gcagatcagagactgcatgtggaatcacagccactggagatcatctacgacgcaatgacg
gtgaataacatgtctgcgttcttcatgcctccaaatgacctggagctggacgaactgact
aatgccacccgcatgaagctagagcaattcagagacagaacctcaaccggactcatgtac
atcatcgagacgcagaaagttcttgacctgaagatcaacctgatggcctcctatgtgatc
gtgccccagatgggcgtctacgaccctaagcacaaccttatcattctggatctgggacac
tttcagatgtcaagtcagagcagagccaaattgccacagctctcagtgggaaagaacacc
attgaggacatcatgtctcgagcctatgactgctttgatgtccagctcaccagcctgcag
ttgttatattctaaagcagatcagaactgggagaaggctcggaagctgagacagtcttcc
ctccacattctggagcccgtcgacttgaaggtggttttcagcagagccatggtggtcact
gactcaaggatgccaaagtttaagatatttggcgagctttgtctgctctcccttcgcatc
tccgatgacaaagtccgcggcatcctggagctgatcgacagcattccactgcctgagagt
cggccctcgcctcggactgctgctccgcaaactacgcccagggttctcaaaccgagagac
acccctcagctgacccccagaaaaccagctatggttgacctgcgctcctcgataatattt
gactcaggttccgaagaggatttgttctttgatgcacccagttctccaattgaggatctg
ccattcttcgaggctagctctggctccctagagagatcaacctctgtaaagaggaagacg
atggtgaaacatgatcccaagaagaacatgacagagttcttgctgaattttgagataaac
aagttgtccatccagctctgccgcctttcagcgggcttggaggttcccgtcctgcgtctg
gatatcgacggtctgggcacggagctcaaagtgcgcacatttgatatgacttcctacact
tatctgcaggaaatatgcctggagtgctcagagtacatggatggagaaaacaagagggtt
cacctcatcaccacacgggataacacagagcaggatctgctcatgctggagtacattaag
gcagacaagaatgctccagattttaaatcagtgtataaaaacacagaacagcttatcaag
gtaaacttctcctccttggatgtgcacctccacactgaagccctcctcaactctatgaac
ttcctgaacggcctcctccctcctgcaaagaaggaggagcctgttgagcagcctgcgccc
caacaagacgacgagggagagggagacagtgaggaggagaagaaagaggagtccaccatt
accaagaaatcctctacaaagaagtcaaagtttgaggatgtggtgaatttgcacctcaga
gcagatctgtcctgtctgaaggtcttcatcagaggagagaaagccagaatctctgagatc
agtatagaaggtctggtgtctgaagtacagatgaaaaagaaatcagtcgaaattctggct
aatctgaagaatattgtcatattggactgtgacaaagatgctctgtacaaaaaggcagtg
tctgtagcggataaggacgtgtttagcttccacatggtgaactacgtggacgccacagat
ggagacgcctacacagacatgcagatagtggacacaagcgtcactctgaccgtgggctgt
atccaggtcatctttgtcaacaagtttgtctcctcaatactggccttcatcaataacttc
caggaagctaaagatgctctagcagaggtcacagtgcaggcagcagagaaagcggccacg
ggcgtgttggagcttgctgagaaaagcactcgcatttcactgaatgttaacatcaaagca
cccgtcgttttcctcccacaatcctccatttccactaacgttattgtggctgacctgggt
ttggtgacggtcaagaaccactttgagatcgtgccatgtaaaacacacactaagattccc
cccatcctggacatcatgagtgtggccctgagtgagctgaagatgtacagaaccacattt
aaggatggccagttccagagtgagattcagttactgaagcctgtaaacatggacctgtca
atcaagcgcaatctctctgcctcctggtatcacagcatccctgacaatcagatcaacgca
cacctcaagcccttgagtctgatcctgagtcaggaggacctaactgtggttttgaggact
ctgaatgagaacctgtccgagacttctgatgcagttcctgctcctaaaagttctgataag
gcagagactgcatctaccaaagattcccaggaatctggagcagggacaacagtagtaaca
gcagcagtggtggagggacagaagactgccaaacagaaaagcacgctaaaactccacttc
aagtttgattcaatgactctggttctctacagctcaagtggaagtgagactgcattgctg
gactcccatgatgaacagctgaagctggcggagttcaccctgggcaccatctccactgca
gtgcacatgttctcagacagctccatgaaggcctctgtcaaactcgctgaatgcctgttg
gatgataagaggaagagggtcaacatgatcacttccaggatgatggcaatgcgaaagggt
gctgagaagaacgtcatggtggaggtgaactatcgccagggccgggatggcaccaccctc
gacaccgtagttcaggatctttacctctgcgccagcatggagttcctgctcacggtggcc
gatgtctttctgaaagccatggatcagggcttctccagccaacccaagagcagcaaacca
gcatccacttccaccaaagacccggcagctcctgctcagcccgtggtggcaaagacggag
atgaacgtgatggtgaagaaccctgagatagtgtttgtggctgatctgagccgcgccgat
gccccggccctcgtaatgaccacgcagtgtgagctagtgatgaagaatgacgctgccggt
cagctcatgacggccgccatcactgacttgatggtggtagcgtgcccgtttgtgtgtggg
gaagatgagagcaacatcaccactgtgctgcagccgtgccaggtgttcttcaaacaaaca
cagttgcctgctcagcctcaaaaaatcgagctctccatgaactccctcaccctgaaggtg
tcacccatcatcataaacacagtcattactatccagtcagcgctgacccctgcagccgag
acccctgaggagttagagagcccggtgccccctgacctgtgggagcgcagggactggagg
gacctcaaactctggttcctggaggaggagggagaggaagatgcccagtctgtggccccg
ctcatcccccagggcgagtcactccagcttaggatttcctccatttgcctgactctagag
gcaggtgtgggtcatcgcaccgtccccatgctgcttgccaaatcctcttttcatggagat
gtgaagaactggagcaccctgatcaacctgcagtgccacctcaacatggaggtcaattat
tataacgagattttgggagtgtgggagccacttttggagccacttgaagacgaaactaaa
gatggtttcagaccctggacactggaactgaagatgaagaaaaagccagtgaagcggacc
ggtatttccgatgaggtggactacattgtaccagattacaaaacagtaatcagcatcaat
agcaaagaccagctgaacattactctctccaagtgtggactgaacatgctgagtaattta
ggaacggcatttgcggaagctgccaagcagactgcggagtgtttccaaaaggaccaggct
ccattcgtggtgaagaatcggttaggtttgccagtggctgttctgtacagcgaagtgttt
aagcctatcgggaagaagtctaaagaccgtgtggcggagctacaggatggagagagctta
aacatggactacacactcactgctgcagatgctgaccagttctcagctatgaccagtcta
agcagcaaaaactacatccagcctacccctgtcggccacaccgcagccagcgtcatcccg
ctaatcaaagtgggccgtggcatgtacagcgtcatgcacctggagtctggagtcacacgc
ttcttcgtctgtcagatttactccaacgaaggcagcaagtttgtcaagatccggtcacct
ttcctgatcattaatcacttttcgctgccattccgggtgtttgagggctccacgtgtctg
ggcgtctcttcacccactgaggagttctgcgtccctctcggctcctacagagcggagctt
accctgcagcctgtaatcgagggagacgagcagtacgagcactctgagagcttcagctac
gaaaacctcagtcagaaaccagatgaatgtgtggagaagacatgccatcaccgtggcgac
gctgctcgcattttcaaggtcaacatggttcccgttcgggacactgtgatgtcccacagc
actcaggaagagtttgaccaaccatacgtccttcatctgtggcctcccgtgcttctccgg
aaccttctgccctacccgatcacctacagcttaatggtaaccggaagcccttcgcccaca
atgctgaaggaaggccactcatcccagcttcacacggccatcatggaccactcaagtctg
gagctgaaactcctcggctacctgcagcaggactgggaggcccactaccagctccgctcc
gaccacgacgagatcagtttcattacattccagtcgtgccgctcggacgaggaggtagac
ggggaggccatgaaggcagagctcgatatcgctgttcacgtgaagaaggaggtgggccaa
gtagtggtagccatccattctccttattggatggtgaacaagacaggcaggctgctgcag
tataaagccgatgacatccatcgcaagcatcccaaagattacgacatgcccctgctgttc
tcttttaaaccacgcaactttctgcagaataacaaggtccgcttgatgatttcagacagc
gagctgtcagatgacttctcaatagacacagtcggtagttatggtgacgtcaagtgtaaa
ggaagggccaaagattacctagtgggggtgaagattgacacgagcagtttcagtctgaca
cgcctggtgacgttcttgcccttctacatgcttgtgaacagaacaaagcacgtaatccga
gtgtgcgaagagggagaggatgactggactgaggcaaaacctggagagactgccactcca
ttctggccagagagagattcaaagaagctcagagtgaaggtggacggctgccagtcagct
gctcaagccatcgccttccatcaacctgagaactgcctcctactgctccttgacagcact
ctgggtggtatcatcgttgacgtgaacctcacggagcattcggctgtaatccggttctca
gattaccacgatggtgcagctccttttcttatcatcaaccacaccaaggaaaacacactg
gagttccaccagagctgcatggagcgtagatcctctacttgggggcaggacacacagtct
aactgctctcagaagctggagatggatgagctgggtccagaccaggccgtctactacaca
tgggccgagcccacaggatctcgagttctccgctggagctggggaccctacagtggtgag
ctaaagaatgaggaggacctgctgatggacatgaacgatgagggaaagctgttcgtcatt
tcgttttatgagggccttcagcgggtggcgttgttcaccacagagcggcgtgtctacaag
ctgctatgtgagagcgagagggtggagctagccgaacaggaaattagcctctcactgcag
gatatgggcatctcactggtcaacaacagcaccagccaggaggtggcctacatcggtatc
accagctctgacgtggtgtgggagaccaagccgaagaagaagagccgctggaaggttatg
agcgggaaagacgctgagatgttagagcagcactacaaagcgtatacagagagcagccca
gtggatcatagcatcctagacctggagaacggctaccaggtgaatctgactcctaatggt
ttggacatgaggatactgcagccttatgacgcacccctccgaaggaactttcttccagct
ctgaaggttgagtacagcgtctcagccagacagaaagcgtaccgcgtgcagattaacagg
gttcagatccaaaatcagcttcctggagccattttcccatttgtgttctaccctataaag
cctcccaaatctgtcagaatggactcagaggcaaaaccgttcactgacctcagcctcatc
acgagagcagcaggacactcagacatcctgcgcattaagtattttaaggtgttgattcag
gaaatggacctacgtttggacctaggcttcctgtacgccattttggatctgttcactgct
gagaacgctgccactgtcacctcagaacaggaggtggagctgtttgagaaggacattgag
tatttaaagacaggactgaaccacgtgtccgccacagacacgtcccccatcagcctttac
gagtacttccacatctcacccattaagcttcatctgagcttctctctgagctctggcggt
gaggatgggaacaaggagaagagagagactgaggtgattcctgtgcaatcccttaacctg
ctgctgaagagtatcggagcaacactgaccgatgtccaggacgtcgtcttcaagctggcg
ttctttgagctgactttccagttccgaaccacgcagcagctccagtgggaggtcatccgc
cattactccaagcaggctatcaagcaaatgtatgtactggtactgggattagatgtcctt
ggcaacccgtttggtctgatccgaggtttgtcagagggagttgaggccttcttttatgag
ccatatcagggagcaattcagggtccagaggagttcatggagggtgtggctttgggtatg
aaggctctggttggaggtgcagtagggggtttagctggagcagcatctcgcatcacgggt
gcgatggctaaaggcgtggctgccatgacaatggatgaggagtatcagcagaaaagaagg
gaggctatgaacaagcagccaagcggcttgaaagagggtctcaccagaggagggaaagga
cttgtctctggctttgtgagtggtattacaggcatcgttactaaacctatcaaaggtgct
cagaaggagggagcagcaggtttctttaagggtgttggcaaaggtcttgtaggagccgtg
actcgaccaacagggggcattattgacatggcgagcagcaccttccagggcatcaagaga
gcggcagaaacatctcaggacgtggagagtttgcgacctccgcgattcattcatgaggac
ggcgtcatcagaccgtataaagagagagagggcatcggcagccagatgttacagaaaatt
gaaaatggacggtttgcgaagtacagatactttgctcatgccaaggtgaacgagtcagat
ttcctgatgatcaccaaaaggggcatattttttgttactaagggcacttttgggcagttg
acgtgcgagtggcagtatctctttgatgagttcaccaaagatcccatgattgtagaagag
agacgactgcgcattgaggcaaaggaaagagtgaagtctgtgtttcatgccaaagagttt
gggaagattatcaacttcaagactccagaaatagccaagtgggttctgaccaagcttcag
gatgccagggagagccttcagaaataa
DBGET
integrated database retrieval system
