Pangasianodon hypophthalmus (striped catfish): 113533780
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Entry
113533780 CDS
T05759
Symbol
scaf8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113533780 (scaf8)
03041 Spliceosome [BR:
phyp03041
]
113533780 (scaf8)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113533780 (scaf8)
Spliceosome [BR:
phyp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
113533780 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
113533780
NCBI-ProteinID:
XP_026781913
LinkDB
All DBs
Position
Unknown
AA seq
1275 aa
AA seq
DB search
MEAVKAFNGELYSLNEYKPPISKAKMTQITKSAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSKNIITTFQNLYRCPSDDKSKIVRVLNLWQKN
SVFKSDIIQPLLDMAAGLPPPSVTPVPASTAVPVNNATPGTPATPATPANIMPSLPDWAS
QISNSDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAAAANTLNPLEQRVSSFNKKLLGQFDFGGESEASEDSKKDTAAPQLPMVSESINNSLF
HQLAEQLQQQNLEQFQKQILEHQQHQQKSMAMESQESIFGPENSATPAQSNIQPQLQEQE
TKLDDSIDNQQQDMDLDEGQDTVDEDMFESEEKKTSGTRSRTHSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKFLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSYKIG
SKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGMIDQETVNSEWE
AQKNTEAPKEPQVPPVAAESTAASTSQNETFTQPVAMMPVQIPVAQTVPAVGLVPPTFPV
TMAMPPPGFGPPPPFLRPGFNTTQPPPGFMAPSGVAPSAVGAGLASAQTPLVAQPTQDGN
KDSTFGAMLPPTSTIPASFMPSGMPGAVFNPVGAQAQQASTDKTTASAESVDTPNEITLQ
GMQNAVRSGMGLLGMHPSASLSHPLSGQRMPGLLPLDLRPNLLQGAGARFPMLMQQGLAQ
QANSLLDVSLQARARAPFPQMEHFNRAEGPFARAPTPAAPAPDSMDKTNNDNTPTTSESG
GQQEGDQDYRFPPQEKPSTGLLRTPPPEMRTEPAPVRAPLLERPPRGGMHMEGREGPGRR
EPMPGPFRAETRWGAPRGDLDERDMRGMSAGPPKSFQEDRGNPNFQNRFEMRGGAMGGVG
PGWNRGGGGGGGGGGGGGGPFNANMHQDFDDRRRPWERQKDRDDRDFRREMNDNRHRERD
RERERDRERGRDRNRERERDRERDNDKERDRERGGWAPVNPQPQPLLPLPRPSQPLLPLP
TPLLNLPPSQPESHPKPLLQHEPQPAGRQAESQPDAKPPLQPQPETESAGGQEKKDAFSD
SVHDLDSKPENDKEPTAEPSHPSPSAPTAEPLNETQAPEVSASPLVAAGGGQTAPKEEAE
TGTEPELVKTDTEET
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgttaaagcgtttaacggcgagctgtactctctgaatgaatacaagcctccg
atctccaaagcgaagatgacccagatcaccaagtcagccattaaagcgataaagttctac
aaacatgtggtccaaagcgtggagaagttcattcagaagtgcaagcctgagtacaaggtc
cccggtctgtacgtcatcgactcgatcgtgcgtcagtcgcggcaccagttcggccaggag
aaggacgtgttcgctcctcgcttcagcaagaacatcatcaccaccttccagaacctctac
agatgcccctctgatgataagagtaaaatcgtccgcgtcctcaacctgtggcagaaaaac
agcgtgttcaaaagcgacatcatccagccgttactggacatggcagcgggactcccgcct
ccgagcgtcacgcctgttcccgccagcaccgctgttcctgttaacaacgccacgcctggc
actcctgctactccggccactccagccaacatcatgcccagtttaccggactgggcctct
cagatctccaactcggacaccgtggcagctgtagcgcagatcctccagagccctcagggg
cagcagttgcagcagttggtgcagagtctgcagatgcagcagcagaagcctcagccgtct
ctcctgcaggcgctggacgccggtctggtggtgcagctgcaggccctgacggctcagctc
acagcggccgcggcagccaacacactcaacccgctcgagcagagagtgtcctccttcaac
aagaaactcttgggacagtttgactttggcggcgagtccgaagccagcgaggattctaaa
aaggacacggcggcgcctcagttgcccatggtttcagagtccattaacaactccctcttc
catcagctggctgagcagctccagcagcagaacctcgaacagtttcagaaacaaatttta
gagcaccaacagcatcagcagaagtccatggccatggagagccaggagagcatcttcggc
cctgagaactcggccactccagcacagagcaacatccagccacagctccaagaacaggaa
accaaactggatgattctattgacaaccaacaacaggacatggacctggacgagggacag
gacactgtagatgaagacatgtttgagtcggaggagaagaaaaccagcggtactcgttcc
agaacacactctcggtctcgctccagatccccaaagaggaggaggtcgaggtcacgctca
gggtctcggaagcgcaaacaccggaaacggtcgcgctcgcggtccagagaccgaaagagg
aaatcctctcgttcctactccagcgagcggcgagcacgagagagagaaaaggagcggcaa
aagaaaggccttcctcccatccgctccaaatttctcagtgtgtgtagcactacgttgtgg
gtgggccaagtggacaagaaagccacacagcaagaccttaccaacctttttgaagagttt
ggccagattgagtccatcaatatgattcctcccagaggatgtgcttacatctgcatggtg
catcgacaggacgcttatcgggcacgacagaaattaagcaccggctcgtataaaatcggg
tccaaagttataaagatcgcctgggctcttaataagggtgtgaagcaggagtacaaacag
ttctgggacgtggaccttggcgtgacctacatcccctgggagaaggtcaaactggacgac
ctagacggctttgcagaaggaggcatgatcgaccaggaaacggtcaacagtgaatgggaa
gctcagaagaacacagaagcacctaaggaaccccaggttccgccggtggctgctgagagc
accgcagcgagcacttcgcagaacgaaaccttcacgcagccggtcgccatgatgcccgtg
cagatcccagtggcacagacggtccctgccgtcggcctggtcccgcccacttttccggtc
accatggcaatgcccccaccaggcttcggtcctccgcccccctttctcaggcctggattc
aacactacacagcctcctccaggtttcatggccccttccggtgttgctccgtctgccgtc
ggagctggtcttgcctcagcccaaacacctctggtagctcaacctactcaagacggcaac
aaagactcgacattcggagcgatgcttcctccgacgagcactattccagcaagcttcatg
ccctcgggaatgcctggagcggtattcaaccctgtgggagcgcaagcacagcaggccagc
actgacaagacaactgcatctgcagagagcgtagacacacctaatgaaataacactacag
ggaatgcagaatgcagtgcgcagtgggatgggtttactgggcatgcacccgtctgcatct
ctctctcaccctctctctggccagaggatgcccgggctgctgcccctcgacctgcggccg
aacctccttcagggagccggggcgcgtttccccatgctcatgcagcaaggcctggcgcag
caagccaacagcctcctggacgtctcgcttcaggcccgcgcccgagcccctttccctcag
atggagcactttaatcgcgcagaaggtccctttgcgagggcccctactcccgcagctcct
gcaccagacagcatggacaaaactaataatgataatacgccgactacttcagagagcgga
ggccaacaagagggcgatcaggattatcgcttcccacctcaggagaaaccgagcacaggc
ctgctgaggacgcctcctcctgagatgaggacggaacccgcgcctgtgagagctccgctg
ctggagagacctcccagaggaggcatgcacatggagggccgagagggacccgggagacgg
gagcccatgccgggccctttcagagccgagacgcgctggggcgcaccgcgcggggacttg
gatgagcgagatatgagaggaatgtcagcaggaccaccgaagagctttcaggaggatcgg
gggaatccgaatttccaaaaccgttttgagatgcgaggcggagccatgggtggagtcgga
ccgggctggaaccgcggtggaggtggaggaggaggtggaggtggaggtggaggtggtccc
ttcaatgcgaacatgcatcaggactttgatgatcggcgtcgaccctgggagaggcagaag
gaccgtgacgacagggacttccgcagggaaatgaatgacaaccggcacagggagagagac
agagaacgggaacgggaccgcgaacgaggtcgagatcggaatcgggagcgagagagagac
agagaacgggataacgataaggaaagagacagagagcgcggcggctgggctcccgttaat
ccccaacctcaacctctcctccctcttcccagaccatcccaaccgctgctccctctaccg
acgcctctgctaaacctgcctccatctcagcccgagtcgcatcctaaacctctcctacag
cacgaaccgcaacccgcagggagacaagccgaatcacagccggacgcaaagccgcccctg
cagccgcagcctgaaacagagagcgcaggcggccaagagaagaaagacgcctttagtgac
agtgttcacgacctggactccaaacctgaaaatgacaaagaacccacagccgagccgtct
cacccctccccgtccgctcccacagccgagcccctaaacgaaacgcaagccccggaagtg
tccgcttcgccgctcgtggctgcaggcggcggacagaccgcgccgaaggaagaagccgag
actgggactgagcctgagctagtgaaaacggacactgaggaaacataa
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