Pangasianodon hypophthalmus (striped catfish): 113533895
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Entry
113533895 CDS
T05759
Symbol
cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113533895 (cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113533895 (cnot3)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113533895 (cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113533895 (cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
113533895
NCBI-ProteinID:
XP_026782132
LinkDB
All DBs
Position
Unknown
AA seq
860 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKSWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPVQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKLIERHRYHI
RMLETILRMLDNDSVQVEAIHKIKDDVDYYIDSSQDPDFKENEFLYDDLDLEDIPMLATS
PQGHNEEEMSTPTSTTSSSPIPPSPATATTEIPEEEKKRGRSTDSEVSQSPVKSSNPLSS
FSSSSSSSSGFSSSSTSSLVSMAAVVGGTASVSGGNTLLGSFSSAVQQHPHSKLSSSSSS
SSSSSSSSSSVTSSSTSSPPSHPNLPSSTTPLALPTSNSQPLTSAGLNVGKAGTAVTSSS
MPGMMPSNMAAIISSSMPTPYAQAAAGSGPSGPAGNNNSNSSTVSAVGGANANTNSTANA
NGTVPMGSNGGILGLGPAQSTHQGAAQLPISPVGTVPGGGANMGPGNGGSTVSSGGIMGN
VAPARPPSVVKQNGGTNPLAYSAVVADSSSDSSLSSASLSQSSQPSSTSSSANQTLDNGP
TLLSSITLPPSSQSPSFSDSTPGGGSLLNGPHSYTPSTEAIKAPEPLSSLKAMAERAALG
SGLDGEIPPLHLTERDLFSGSSAAPGPPVPPQPAVTEVNLPPTLGACPLGPSPLTKEQLY
QQIMQEAAWGHMPLPSDSERIRQYVMRTPCPLLPFHHHTPPHHSDSIDFYQRLSTETLFF
IFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWG
QRKKEGFTFEYRYLEDRDLQ
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagagaaaactccaaggtgaaatagaccggtgtttgaaaaaagtggcagag
ggggtggaacagtttgaagatatttggcaaaagcttcacaatgcagccaacgccaaccag
aaggagaaatacgaagctgacctcaagaaggagattaaaaagctccagagactgcgagac
cagattaagtcatgggtggcgtccaacgagatcaaagacaaacggcagctagtggagaac
cggaaactcattgagacgcaaatggagcgctttaaagtggtagagcgggagacaaagacg
aaggcgtactctaaagaaggactgggtttggctcagaaagtggatccagtgcagaaggag
aaggaggaaacagaacagtggctcacgaacaccatagacactctgaacatgcaagtggat
cagtttgagagcgaggtggagtctctgtccgttcagacaaggaagaaaaaaggagacaag
gagaagcaggatcgtattgaggagctgaagaagctgattgagagacaccggtatcacatc
cgtatgctggagaccatcttaaggatgttagacaacgactcagtgcaggtggaagcaatc
cataagataaaggacgacgtggactactacatcgactcctcacaggatcccgactttaag
gagaacgagtttctgtacgacgacctcgacctcgaagacatcccgatgttggccacatct
ccgcagggacacaatgaagaagagatgagcactcccacctccaccacgtcgtcctctcct
atccctccatctccagccacggctaccaccgagatccctgaagaggagaagaagagaggc
cgatctactgacagtgaagtgagccagtcacctgtgaagagcagcaatcccctgtcttct
ttctcctcctcttcctcctcctcctcaggcttttcctcctcttccacctcatccctcgtt
tccatggcagctgtcgttgggggaacagcatcagtttccgggggcaacacgctcctgggc
agtttcagtagtgcagtccagcagcatccgcacagcaagctatcctcctcctcctcttca
tcgtcgtcttcttcctcctcctcctcctctgtgacgtccagcagcacgtccagcccaccc
agccaccctaatctgccctcttccaccacaccgttagccctgcccacttctaactctcaa
ccactgacatcagcaggccttaatgtgggcaaagcaggcacagctgtgacgagcagcagt
atgccaggcatgatgcccagcaatatggccgccattatttcgagctcgatgcccactcct
tacgcccaagcagcagccggtagtggcccgagtggacccgcaggaaataacaacagcaac
agcagcactgtttcagcagtaggtggagcaaatgctaacactaattctacggctaatgct
aacggtacagtgccgatgggctccaacgggggtattttaggcctcggaccagcgcagtca
acccaccagggagcggcgcagttacccatcagcccagtgggcacggtgccagggggtgga
gccaacatgggccctggaaacggaggcagtacggtgtcatcagggggcatcatgggtaat
gtggcacctgcccgaccacccagtgtggttaaacaaaatggaggaacaaaccctctagcg
tacagtgccgttgtggccgacagcagctcagactcctccctcagcagcgccagcctatca
cagagcagccagccctcttccaccagctcctcggccaatcaaactctggataacgggccg
actctgctgagctccatcactctgcctccctcctctcagtctccttcgttttcagacagc
acccctggtggtggcagtttactcaatggcccgcactcatacacacccagcacagaggcg
ataaaggcccctgaacctctgagctctctgaaggcgatggctgagcgagcagctctaggt
tcgggactggatggagaaatcccacctcttcatctgacagaaagagatttgttttcggga
tcctcagccgcccccggcccccctgtccctccccaacctgctgttacagaggtcaatctt
ccacctactctgggggcgtgtcctctaggcccctcccctctcactaaagagcaactatat
cagcagatcatgcaggaggcagcctgggggcacatgcccctcccatcagactcagaaagg
atcaggcaatacgtgatgaggactccgtgccctcttttgcccttccaccatcacactcct
cctcatcacagcgactccattgacttctaccagagactctccactgagaccctctttttc
atcttctactacctggagggcacgaaggctcagtatctttcagctaaagccctgaagaag
cagtcttggagattccacactaaatacatgatgtggttccagagacatgaggaacccaag
accatcaccgatgagtttgaacagggaacctatatttactttgactatgaaaaatggggc
cagagaaagaaagagggcttcacattcgaatacagatacctggaggaccgagacctgcag
tga
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