Pangasianodon hypophthalmus (striped catfish): 113533976
Help
Entry
113533976 CDS
T05759
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113533976 (trim71)
04121 Ubiquitin system [BR:
phyp04121
]
113533976 (trim71)
Enzymes [BR:
phyp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113533976 (trim71)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113533976 (trim71)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
113533976 (trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf_RING_Vps8_fungal
Ig_GEX2_N
DUF4094
Motif
Other DBs
NCBI-GeneID:
113533976
NCBI-ProteinID:
XP_026782310
LinkDB
All DBs
Position
Unknown
AA seq
809 aa
AA seq
DB search
MASFPDSDVQTCPLCKELCGSSAPISSSSSTSSSSSQTSNSSTTSSTRRLHVLPCLHAFC
RSCLESLRSNGDPLKLRCPTCDQKVPMSESGLDALPSSNFMFSSLLDVVVSAEDQGTSSC
IGSGGLLRAQHVLSEPQCSSCDEGNGASSHCLDCQEYLCDNCVRAHQRVRLTKDHFIESL
AENLHMPGRTGGHGTPLSLSQAFHNFSLLPVFQDRMDYCQQHDNAVLRFFCEICSVPICR
ECSVGRHVGHTVSYLQDVLHDSRALTIQLLADAQQGRQAVQLSIEKAQAIAEQVELKAKV
VQTEVKTTTLRHKKALEERECELLWKLEKIRQVKAKSLYLQVEKLHQNLTKLDSTISTVT
KVLEEGRNIDILLAREHMLNQLQELKALRCILQPQEDDRIMFTPPDQALLIAIQSMGLIS
SGAFASATKAHGEGLKRALQGKLASFTVVAYDHDGEPRLSGGDGVSVVLMSPEGNLSSAD
VSDHQDGTYTVSYLPKSEGEHLLSVLICNQHIEGSPFKVMVKSGRSYGGIGLPVASFGGE
GDGDGQLCRPWGICVDKEGYVIVADRSNNRIQIFKPCGTFHHKFGTLGSRPGQFDRPAGV
ACDSQRRIIVADKDNHRIQIFTFDGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDT
RNHRVQLFGPDGVFINKYGFEGALWKHFDSPRGVAFNQEGHLVVTDFNNHRLLVIRPDCQ
SARFLGSEGTGNGQFLRPQGVAVDQEDRIIVADSRNHRIQVFEPNGNFLCKFGTQGSGFG
QMDRPSGIAVTPDGMIVAVDFGNNRILIF
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgttccccgattccgacgtgcagacgtgtccgctgtgtaaggagctgtgtggc
tcctctgctccgatctcctccagttcatctacctcctcctcatcatcgcagacctccaac
tcgtctactacctcgtccacacgaagactgcacgtcctgccgtgcctgcacgccttctgc
aggtcgtgcctggagagcctgaggagcaacggagacccgctcaagctccgctgccccact
tgcgaccaaaaagtacccatgtccgagtcgggcttggatgcgctgccgtcgtccaacttc
atgttcagcagcttgctggacgtggtggtgtccgccgaggatcagggcacgagcagctgc
atagggagcgggggtcttctccgtgctcagcacgtgctctcggagccgcagtgcagctcg
tgcgatgaagggaacggcgcgagctcgcactgcctcgactgccaggagtacctgtgcgac
aactgcgtgcgcgcgcaccagcgcgtccgtctcaccaaagaccacttcatcgagagcctg
gcggagaacctgcacatgccgggacgcaccgggggccacggcacaccgctcagcctctcc
caggcgtttcacaacttctcactgcttccggttttccaggaccgaatggactactgtcag
cagcacgacaacgcggtgctgcgttttttctgtgagatttgctctgtgcccatctgtagg
gagtgcagtgtggggagacatgtgggtcacactgtgtcctacctgcaggacgtgttgcat
gactccagagcgctcaccatccagctgctcgcagatgcacagcagggacgacaggccgtg
cagctaagcattgagaaagcacaagccatcgctgagcaggtggaactgaaggccaaggtg
gtgcagacagaggtgaagaccaccacgctgcgtcacaagaaagccctggaggagcgcgag
tgtgagctgctgtggaagttggaaaagatccgccaggtgaaggccaagtccctgtacctt
caggtagagaagcttcaccagaacctcaccaagctggacagcaccatttccacagtcaca
aaggtgctggaggaaggtcgcaacatagacatcctactagcacgtgagcacatgctgaat
cagctgcaggagctcaaagcactgcgctgcattctgcagccacaggaggacgatcgcatt
atgttcacacctccagatcaggcgcttctgatcgccatccagtccatgggactgataagc
agtggagcctttgcatcagccaccaaagcccatggggaaggtctcaagagagctctgcag
ggaaaattagcttcctttaccgtagtggcatatgaccatgatggagaaccacggttgtct
ggtggagatggtgtatcagtggtcttgatgagtccagagggaaacctctctagtgcagat
gtgtctgaccaccaagatggcacctacacggttagctacctgcccaagagtgaaggtgag
catcttctttctgtgcttatctgcaaccagcacattgagggaagccccttcaaagtcatg
gtcaaatctggccgcagctacggaggtattggtctgcctgttgcatcctttggtggagag
ggtgacggagatggacagctgtgtcgaccctggggcatctgtgttgataaggaaggctat
gtgatcgtggctgaccgaagcaacaatcgcatacagatcttcaagccatgtggcaccttt
catcacaaatttggcactttgggctcacgacctggccagtttgaccgacctgcaggggtt
gcctgtgacagccagagaagaatcattgtggctgacaaggacaatcaccggatccagatc
ttcacctttgatggccagttcctcctcaagtttggtgaaaagggaaccaaaaacgggcag
ttcaactacccctgggacgtagctgtcaattcggaggggaagattctggtctcggacacg
cgcaaccaccgagtacagctgttcggccctgatggggtgttcatcaacaagtatggtttt
gaaggtgccctctggaagcatttcgactcacctcgaggagttgccttcaaccaggaaggt
cacctagtggtgactgacttcaacaatcatcgcctgctcgtcatcaggcctgactgccag
tctgctcgctttcttggctctgagggaacaggtaatgggcagttcttgcgtccacaaggc
gtagctgtggatcaagaggatcgcattatcgtggctgactcccgtaaccatcgtattcag
gtgtttgaacccaatggcaacttcttatgcaagtttgggactcagggtagtggcttcggg
cagatggatcgcccatcaggtatagccgttacccctgacggaatgattgtagccgttgac
tttggaaacaatcgtatcctcatcttttga
DBGET
integrated database retrieval system
