Pangasianodon hypophthalmus (striped catfish): 113533986
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Entry
113533986 CDS
T05759
Name
(RefSeq) collagen alpha-1(X) chain-like
KO
K19479
collagen type X alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
113533986
NCBI-ProteinID:
XP_026782330
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MDLRVASILLLLVALVAGHGERYMVKKVVKAPYAVKSHVVSVPGEPGPPGEPGEPGPPGP
PGPPGESAEGLPGPQGPPGPPGPAGYSAPGKPGTPGGPGKPGANGAPGPKGDSGSPGPQG
PRGAPGPAGSPGPSGLSATGKPGPAGLPGSMGPRGEPGVKGHPGIPGAPGQKGDRGIGIQ
GPPGEPGASGPMGPVGAPGQPGVGKPGKPGYPGEPGKGGSPGRDGAPGPMGPTGPKGHTG
SPGVGIPGKPGENGAPGLPGPTGPKGPQGATGAPGAPGSPGYGKPGAPGSKGDTGPVGSP
GATGQKGEPGARGPTGYTGATGPVGPGGPQGPRGFPGEKGATGEKGETGPMGPQGFKGHK
GDQGPQGAEGKPGYPGATGPQGPRGATGAPGSKGDTGETGATGAPGATGPIGPKGNTGNP
GSPGETGPSGAPGARGATGPSGPPGAPGAKGHPGLPGAPGPAGLAAKGIPGPQGPPGLPG
SDGAPGESGQPGPPGPPGPPGEVIIAETKGTFVKEPFVKTPMSAFTALTTTPYPPAGSPI
KFEQIVYNAENHYDPETGIFTCQIPGVYYFSYSMHVNGANALVALYKNEDPVMFTYDEYN
KGFLDQISGSAVLQLNEQDTVYVQIPDDEANGVFAADNVHCSFSGFLIAST
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggacctacgagtagcaagcattctccttctcctggtggctctggttgctggccatggc
gagagatatatggtgaagaaagtggtgaaggctccttatgccgtgaaaagtcatgtggtt
tctgtgcctggagagccaggtcccccaggtgagccaggtgaacctggacctcctggacct
cccggaccccctggtgagagtgctgaaggactgcctgggcctcagggaccacctggccca
cctggacctgctggctactcagcacctggaaagccaggcactccaggtggaccaggcaaa
ccaggtgcaaatggtgcacctggacctaaaggagattctggttcacctggtcctcaggga
ccaaggggtgctcctggacctgctggcagccctgggccttccggtctatctgccactggc
aaacctggaccagctggtttgcctggatcaatgggaccaagaggagagccaggtgttaag
ggacatccaggtattcctggtgcaccaggacaaaaaggagacagaggtattggcattcaa
gggccaccaggtgagcctggtgcatctggaccaatgggacctgtaggcgcacctggtcag
cctggtgttggtaaacctggtaaacctggctaccctggtgagccaggtaagggaggttca
cctggtcgtgatggggcacctggtcctatgggaccaactggaccaaaaggccacactgga
tctcctggagttggaataccaggtaaaccaggtgaaaatggggctccaggattgccaggt
cctacaggacctaaaggtcctcagggagcaacaggagcacctggtgctcctggtagtcca
ggttatggtaagccaggtgctcctggttcaaaaggtgatacaggtccagtaggtagccct
ggtgcaacaggtcagaaaggtgagccaggtgcaagggggccaacaggatacacaggtgca
actggcccagtgggtccaggcggtcctcaaggtccaagaggtttcccaggtgagaaggga
gctacaggtgaaaagggtgaaacaggtccaatggggcctcaaggctttaagggacataag
ggagatcaggggccacagggagctgagggcaaaccaggctacccaggtgcaacaggccca
caaggcccaaggggagctacaggtgctccaggtagcaaaggagatactggcgagacaggt
gcaactggtgctcctggagcaactggacctattggacctaagggtaatacaggaaatcct
ggatcacctggtgaaacagggccttcaggtgccccaggggcaagaggagctactggtcct
tctggtccaccaggtgcaccaggagctaaaggtcaccctggtcttcctggcgcacctggt
cctgcaggtcttgctgctaaaggaattcctggaccacaaggtccaccaggacttcctgga
tcagatggtgcccctggtgaaagtggacaacctggacctcctggcccacctggtcctcct
ggtgaggttattattgcagaaactaagggaacttttgtcaaggaaccttttgtcaagacc
ccaatgtctgcctttaccgccttaactacaacaccttatcctccagctggtagccctatt
aagtttgaacaaattgtctacaatgctgagaatcactatgatcctgagacaggtatcttt
acctgccagattcctggagtgtattacttctcatacagcatgcatgtgaatggagctaat
gctctggtggcactgtacaaaaatgaagacccagttatgttcacgtatgatgagtacaac
aagggcttcctggaccagatttctggtagtgcagtccttcagcttaatgagcaggacacc
gtttatgtccagatccctgatgatgaggcaaacggtgtctttgctgctgataatgtccac
tgctctttcagtggtttcctgattgcttctacgtga
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