Pangasianodon hypophthalmus (striped catfish): 113534231
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Entry
113534231 CDS
T05759
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113534231
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
113534231
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
113534231
NCBI-ProteinID:
XP_026782694
LinkDB
All DBs
Position
Unknown
AA seq
604 aa
AA seq
DB search
MQPSCQHGPSELQLKVDFFRKLGYSSQEVQAALLKLGLDTDTNAVLGELVRSGARDSPTA
SQESDDGSSGFSHRGGGGSSTKELHRDVHRSPAIDEIDNDLKPIVIDGSNVAMSHGNKQV
FSCRGIELAVNYFLERGHRNITVFVPSWRKEQPRPDVPISDQHILAELERRKIVVFTPSR
RVGGKRVVCYDDRFIVKLACDLDGIIVSNDTYRDLQSERPEWKRCIEEGLLMYSFVNDKF
MPPDDPLGRHGPNLDNFLRKKPLLPDIKRQLCPYGKKCTYGIKCKFYHPERTSQSQRSLA
DELRDNARLSSSVRCCSEESRRSGSSLRGPCHTESGFGSYFPSLEQELEYKLTLEPAVCV
PRNQLNESMKHYWDDVPTKYQASNPACHTPLDWHSLYSAYLNNPSSSSDSGLGSYESQFS
EASQGHDDSYRISSRHNRFYEQQDVPLGCTCSSEPVVQPSIHQYPLSQHPSNCFDYGALQ
FHRPSSNKPYSLPNYLQANGYHHSQPEVCSDTVWLPQTRTPFSLPNSLHAVGRHRPANVY
GCSQGALSPNTVPIEAERAETRKKLHAIFNPHHVDKVMGMFPKLKDAQQLAAEILKLKSK
GELY
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgcagccttcttgccagcatggcccctctgagctccagttgaaagtggactttttccgt
aagctgggctactcgtcacaagaggtacaggcggccctgctgaaactaggcttggacact
gatacgaatgctgtcctgggggagctggtgcgctctggagccagagactcacccacagca
agtcaggagagtgatgatggaagctctggatttagccaccgtggaggaggtggatccagc
actaaagagctccacagggacgttcaccgctcaccagcaatagatgaaattgacaacgac
ctaaaacccatcgtgattgatggaagcaacgtggctatgagtcatggaaacaagcaagtt
ttttcatgtcgcggaattgagctggcagttaactacttccttgagagaggacacaggaac
atcacagtatttgtgccctcatggagaaaagagcaaccaaggccagatgtccccatttca
gatcagcacattctagcagagctggaaaggagaaagatagttgtattcacaccctcccgg
cgggtaggaggcaagcgagtggtctgctatgatgatcgcttcatcgtcaaacttgcttgt
gatctggatggcattatagtgtccaatgacacataccgtgaccttcagagtgaacggcct
gaatggaagcgctgcattgaggaggggctactcatgtactcgtttgtcaatgacaagttc
atgccaccagatgaccctcttggtcgccatggtccaaacttggataatttcctcagaaag
aaacctctgctaccagacatcaaacggcagctttgtccttacggaaagaaatgcacatac
ggaatcaaatgcaagttttatcatcctgagcgaaccagccagtcacagcgttctcttgca
gatgaactgagggacaatgcacgtctgtccagttccgtccgctgctgttcagaggagagc
cgaagatcaggatcttccctcagagggccctgccacactgagtctggctttggttcatac
tttccctctttagagcaagagctggagtacaagctaaccctggaacctgctgtttgtgta
ccaagaaaccaactcaatgaaagcatgaagcactactgggatgatgttcctaccaagtac
caagccagcaacccagcttgccacactcctctggactggcatagtctgtactccgcatac
ctcaataatccttcatctagctcagattctggccttggctcttacgagagccagttttca
gaggcatctcaaggacatgatgattcatacaggataagctctaggcataataggttttat
gagcagcaagatgtgcctcttggttgcacttgctcttctgagccagttgtccaaccaagc
atccatcagtaccctctttcccagcatccatccaactgctttgattatggtgcactccag
ttccataggccctctagcaataaaccctacagccttcccaattacttacaggctaatggg
taccatcacagccaaccagaagtgtgttctgacacagtgtggctccctcagactcgcaca
ccttttagtttacccaactctctccatgctgttggacgccacagacctgctaacgtttat
gggtgcagccagggagcgctcagtccaaacactgtcccaatcgaggcagaacgagcagag
acaaggaagaaactccatgcaatttttaatcctcatcatgtggataaggttatgggaatg
ttcccaaagctaaaagatgcccaacaacttgcagcagagattctcaagctcaagtccaaa
ggagagttgtactaa
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