Pangasianodon hypophthalmus (striped catfish): 113534453
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Entry
113534453 CDS
T05759
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
113534453
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
phyp02000
]
113534453
Transporters [BR:
phyp02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
113534453
BRITE hierarchy
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Paralog
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
113534453
NCBI-ProteinID:
XP_026783074
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MLKNRKLEARGLWESKREFLLAVAGDIVGLGNVWRFPYLCYRNGGGVFLVPYLVLAVTCG
LPLFLLETAMGQYTQEGGITCWQQICPLAEGVGYAGQVIQLYGCMCYIIILAWALLYLVL
SFKSQLPWASCDNIWNTNSCIAVVNNANWTRQVNSTSAATEFWERRVLTISKGIEEVGNI
NWEILLCLIAMWIICYFSIWKGVKSTGKVVYFTATLPYVMLLVLLIRGLTLPGAMQGVIF
YLYPDFHRLLEPQVWMEAASQISYSYSIGVGILTVLGSYNQYNNNCYRDCFWLCLLNSGT
SFVAGFAVFSVLGFMAHVQGVPIEDVAESGPGLAFVAYPQAVALMPLPQLWAVFFFIMII
LLGLDTQFLAMEVIITSVTDVFPKVLRRTGCREIFLLLFCIICFFSQLIMVTEGGMYVFQ
LFDYYACNGACIFFLSVFQSLAVGWAFGAERMCDAIEDMTGSYPNAIFRLCWKYITPFVL
LVSFIYSMVEYQPLTFNRWYVYPAWAYGLGWLMALSSILLVPAWALGRLWKAKGNLRERW
CQLCRPERNLPLDQKQRAKGQLLTSAV
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaaaacagaaaactagaggcgagggggctttgggagagtaaaagagaattcctt
ctggctgtggcaggagacatagtaggtctgggcaacgtttggagattcccctatctctgc
tacaggaatggaggaggggtgttcttggtgccctacttggtgcttgctgtaacctgtggt
ttgcccctattccttctggaaactgctatgggacaatacacacaagaggggggcatcaca
tgctggcaacaaatctgcccactggctgagggtgttggctatgcaggccaggtgattcag
ctgtatggctgcatgtgctacatcataatcctggcctgggcactgctctatttggtctta
tccttcaaatctcagcttccctgggccagctgtgacaacatctggaacacaaacagctgt
attgctgttgtaaataatgccaactggacaagacaggtcaactcaacatcagcagccact
gagttttgggagcgtagagtgctcactatttctaaaggtattgaagaagtaggtaacatc
aactgggagattctcctgtgtctaatcgccatgtggatcatatgctatttctctatatgg
aaaggagtaaagtccactgggaaggtggtgtatttcacagccacgctcccttatgtgatg
ctgctggtgttgctgattcgtggactgactctccctggagccatgcagggtgttattttt
tacctctatcccgacttccacagactgttggagcctcaggtatggatggaggcagccagt
caaattagctactcttatagtataggtgtgggaatattgactgtgctaggcagctacaac
caatacaacaacaactgctacagggattgcttttggctgtgtctgctgaacagtggcacc
agttttgtagcaggctttgcagtattctcagttctgggcttcatggctcatgtgcaaggt
gttcctatagaggatgtggcagagtcaggtcctggcctagcttttgtagcttatcctcag
gccgttgctttgatgcctctgcctcagctgtgggctgtattcttcttcattatgattatt
cttcttggtctggacacacagtttcttgcgatggaggtgatcattacatcagtgacggat
gtgtttccgaaagtgctacgtagaactggatgcagagaaatcttcctgcttcttttctgt
attatctgcttcttcagccaattaatcatggtcacagagggtggcatgtacgtgtttcag
ctgtttgactactatgcctgtaatggagcctgcatcttcttcctttctgtgtttcagtcc
ctggcagtgggctgggcctttggggctgaacgaatgtgtgatgccattgaagacatgaca
gggtcataccctaacgccatctttaggctgtgctggaaatatattaccccatttgttttg
ctggtatctttcatatattctatggtggaataccagcctctgacgtttaaccgctggtat
gtgtacccagcctgggcatacgggctgggctggctgatggccctctcctccatcctgctg
gttcctgcatgggcactgggccgcttgtggaaagcaaaagggaacctcagagagcgctgg
tgtcaactgtgccgtcctgagagaaacttacctttggaccagaagcagagagctaaagga
cagttactgacatcagctgtttga
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