Pangasianodon hypophthalmus (striped catfish): 113534469
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Entry
113534469 CDS
T05759
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113534469 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113534469 (sf3b3)
03041 Spliceosome [BR:
phyp03041
]
113534469 (sf3b3)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113534469 (sf3b3)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
113534469 (sf3b3)
Spliceosome [BR:
phyp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
113534469 (sf3b3)
Complex B
113534469 (sf3b3)
Complex C
U2 SnRNP specific factors
113534469 (sf3b3)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
113534469 (sf3b3)
TFTC complex
113534469 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
113534469
NCBI-ProteinID:
XP_026783105
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGAI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRRFVIHPETNNLVLIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAVCRFANGG
DDWYVLVGVSRDMILNPRSVGGGYIYTYRLVGGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDIQESLFWVRYKRNENQ
LIIFADDTNPRWLTTACLLDYDTMAAADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKADVIVNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaatctgaccttgcagcgtgctacaggcatcactcatgccatccatggc
aacttctcaggtaccaagcagcaggagattgttgtttctcgagggaagattctggagctg
ctgcgccccgatgcaaacactggcaaagttcacacacttctcaccatggaggtgtttggg
atagtccgctctctcatggccttcaggctgactggtggcacaaaagactacatcgtggtg
ggcagtgattcaggtcgtatcgttatcctggagtatcacccctccaagaacatgtttgaa
aaggtgcaccaggagacctttggcaagagtggctgtcgacgcattgttccaggacagttc
ctggctgtggatcccaaaggcagagctgttatgatcggtgctatagagaagcagaaattg
gtgtacatcctgaatagagatgcagccgctcgcctcaccatctcctcccctctggaagca
cacaaggccaacacgctggtctaccatgtggttggggtggatgtgggttttgaaaacccc
atgtttgcctgtctcgagatggactacgaggaggctgataacgaccccacaggggaagcg
gcagctaacacgcagcagactctgaccttctatgagctggacctggggctcaaccacgta
gtgcgcaagtacagcgaggctctggaagaacatggcaacttcctcatcacagtgccaggt
ggctctgatggtccgagtggtgtgctcatttgctcagagaattacataacttacaagaac
tttggggatcagccagatatccgctgcccaatcccacgcagaaggaatgacctggatgat
ccagagaggggcatgatctttgtctgctcagccacacacaaaaccaagtccatgttcttc
ttcctcgcccagacagagcaaggagacatcttcaaggttaccctggaaacagatgaggag
atggtcacagagattaggatgaaatattttgacaccatcccggtggccactgccatgtgt
gtgctgaagactggcttcctatttgtggcatccgagtttggaaaccattatctgtatcag
atagcccacctgggtgatgatgacgatgaacccgagttctcttctgccatgcctctggag
gaaggagacacctttttcttccagccacgaccacttaagaacctggtgcttgtggatgaa
caggagaacctttcccctatcatgtcctgccagattgctgatttggccaacgaagacaca
cctcaactgtatgtggcatgtggtagaggaccaagatctacactaagggttcttagacat
ggtctggaggtctcagagatggctgtgtctgagcttcctggtaaccctaatgctgtgtgg
actgtgaggaggcatgtagaagatgagtttgacgcctacatcattgtgtccttcgttaac
gccacactggtactgtcaatcggagaaactgtggaagaagtgactgactctggcttcctg
ggtactaccccaactttgtcctgttctctgctgggggatgatgctctggtgcaggtctac
ccagatggtattcgccatatccgagcagataagcgtgtgaatgagtggaagactccaggg
aagaagacaattgtgcgctgtgctgtgaaccagcggcaggtggtcattgccctgactgga
ggagagctggtctactttgagatggacccgtcaggtcagctgaatgagtacaccgagaga
aaggagatgtctgcagatgtggtgtgcatgagccttgcgaacgttcctccgggtgaacag
cgatcacggttcctggctgtgggcttggtggataacacagtgcgcattatctccctagac
ccctcggattgcctacagccgctgagtatgcaggctctgcctgcgcagccagaatctctg
tgtatagtggagatgggaggtgtggagaaacaagatgagttgggagagaaaggtgccatt
ggcttcctctatctcaacattggcctgcagaacggtgtgttactccgcactgtgctggac
ccagtgactggggacctgtctgacactcgaacacgctacttgggctctcgaccagtgaag
cttttcagagtgcgaatgcagggccaggaggctgtgttggccatgtccagcagatcatgg
ctgagctactcataccagtcacgtttccatctgacgccactttcctatgaaaccctggag
tatgcctcagggtttgcttcagagcagtgtcctgaaggcattgtggccatctccaccaac
acactgagaattctggctctggagaagctgggtgctgtgtttaaccaggtggccttcccg
ctacagtacacaccacgcagatttgtcattcatccagagaccaacaacttagtcctcatt
gaaacggaccacaatgcctacactgaagccaccaaggcccagcgcaagcagcagatggca
gaggaaatggtggaggctgcaggagaggatgagagggagctggctgcagaaatggctgct
gcctttttgaatgagaaccttccagaagcgatctttggtgccccaaaggctggctcggga
cagtgggcctcactggtgcgcctgatcaaccccatccagggcaatacccttgatttagtt
caactggagcagaatgaagctgcctttagcgtggctgtttgtcgctttgctaatggcggt
gatgactggtatgtcttggtgggtgtgtcaagagacatgatccttaacccacgctcagtg
ggcggtggctacatttatacctaccgcctggtaggaggtggtgaaaagctggagtttgta
cacaagaccccagtggaggatgtgcccctggccatcgcccccttccagggcagagtattg
gtgggggtgggcaaactgctgcgcatctacgaccttggcaaaaagaagctgctccgcaag
tgtgagaacaagcatgttcctaacctggtgacgggcatccacactatcggccagcgtgtg
attgtgtcagatatccaggaaagtctgttctgggtgcgctacaagcgcaatgaaaaccag
ctcatcatctttgctgatgacacaaacccacgctggttaaccaccgcctgcctgctcgac
tatgacaccatggctgcagctgacaagtttgggaatattagtattgttcgtctaccacca
aacaccagtgatgatgtggatgaggaccccacagggaacaaagcgttgtgggacagaggc
ctgctcaatggagcctcccaaaaggctgatgtaattgtgaactaccacataggagaaaca
gtcctgtcactgcagaagaccacgctcatccctggaggctcggagtctctggtgtacacc
actctgtcaggtggcattggcatccttgtgcccttcacatctcatgaggaccacgacttc
ttccagcacttagaaatgcacatgcgctcagagttccctccactttgcggccgagaccat
cttagcttccgctcgtattacttccctgtgaagaatgtaattgatggagatctctgtgag
cagtttaactccatggatccccataagcagaaaagtgttgctgaagagttggaccgcaca
ccaccagaagtgtctaagaaactggaagacatccgcacacgttatgccttttaa
DBGET
integrated database retrieval system
