Pangasianodon hypophthalmus (striped catfish): 113534837
Help
Entry
113534837 CDS
T05759
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
phyp03009
]
113534837 (ighmbp2)
03012 Translation factors [BR:
phyp03012
]
113534837 (ighmbp2)
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
113534837 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
113534837 (ighmbp2)
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Other ribosome biogenesis factors
113534837 (ighmbp2)
Translation factors [BR:
phyp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
113534837 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
DEAD
Viral_helicase1
ResIII
Helicase_RecD
PhoH
nSTAND3
IstB_IS21
UvrD-helicase
AAA_16
AAA_22
Flavi_DEAD
AAA_31
SLFN-g3_helicase
SRP54
Zot
AAA_25
NPHP3_N
AAA_18
AAA_33
ATPase
HEM4
AAA
Glyco_transf_21
UvrD_C_2
AAA_5
ABC_tran
Motif
Other DBs
NCBI-GeneID:
113534837
NCBI-ProteinID:
XP_026783616
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MEVESFVSKTLELLQEERGAEIEETRAWQKNLSLKNLQQKGVCLLKLQIGSQRTGMHGRL
LVSFEPRKSIGPSVLPSHSFGPGDIVGLYESEGCSQPNQLCSGVVTRVTQASITVAFDET
HDGLNLESDGLYNIMKLANDVTYKRLTRALNSLNGYRSGPATHLISVLFGYSEPGMLSQQ
NALEWINNGLDSSQQEAVSFALSQKDVAIIHGPPGTGKTTTVVEVILQAVKQGQKVLCCA
PSNVAVDNLVERLAKSKAKVLRLGHPARLLESIQKHSLDAVLAQSDSTNIIADVRKDMDK
AFSHIKKVRDKGQRSSLRREIGELRKELKSREEVAISQILKRASVILATNTGSSDDGPLK
YLPSEHFDLVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQNAAAKGLSVSL
MERLIQKYGDSIVRMLTTQYRMNSAIMQWASEQMYQGKLTAHPSVEKHLLRDLAGVTHVE
ETSMPLLLIDTAGCGLNEMEDTDEQSKGNQGEVDIVALHVKTLTEAGVQAKDIAVIAPYN
LQVDLLRQKLSNEYPDLEIKSVDGFQGREKEAVLLSLVRSNRKGEVGFLAEDRRINVAVT
RARRQLVVVCDSQTVRNHDFLRSLVDYMSEHGEVRTAFEYLEDLVPENYHRDFKDEQNNI
KASSTKTKAKNQQGKRNETKHNKVSESKSKGNGQSKDDPHISSNLKSSLPKPKADDQIES
QIKKEEMRQQLLIFLDNQSQTELQFPSSLNSHERLLVHQLCEELELKHVSKGTGKQRHIT
VSKPVAEPEERLEEESVSTRPEIQTSEELTEKESNRQPLKPALDLKSLHLERMRREQEKR
EEKIQSKRQETEHKDSKGPSTKKNKGVTKGKGKMKAGAVDVAAAATAEDDFDALIDAVVK
AESVCGFMKCKASVLTLGQLCVYCNRQYCLSHHIPEVHGCGDKAKAQARMRISKEGVLYA
GSGQKDKSMDPNKKAYLQRKLDSKLKDMASQRKSKSKDKEH
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgaaagtttcgtttccaagactcttgagctcttgcaagaggagagaggagct
gagatagaagaaacaagggcatggcaaaagaatctgtcactaaaaaatctacaacagaaa
ggagtatgcttgctgaaacttcagattggaagccaaaggacgggaatgcatggcagactt
ctggtttcatttgagccccggaaaagtatcggcccttcagttcttcccagtcacagcttt
ggacctggtgacattgtgggtctttacgaatcagaaggatgcagccagcctaatcagctt
tgctcaggtgtggtgacccgtgtgacgcaagcatccataacagttgcttttgatgaaacg
catgatggcctcaacctggaaagtgatggactatacaatattatgaagcttgcaaatgat
gtaacttataaacgattgactcgtgctttaaattctttgaatgggtatagaagtggtcct
gccacccatctaattagtgtcctttttggttactctgagcctggaatgttgtcacagcag
aatgctttagagtggatcaataatggattagacagttctcagcaggaggctgtgtcattc
gcgctctctcagaaagacgttgctatcatacacgggccaccagggacggggaaaaccaca
acggtggttgaagttattctacaggctgtaaaacaaggccagaaggttttgtgctgtgct
ccatccaatgtggcggtggataatttagtggagcgcctggctaagagcaaggctaaggtc
ctgcgcctgggacatccagcacgcctgctagagtcaatccagaagcattcactggatgca
gtgcttgcacagagcgacagcaccaacatcatcgcagatgtccgaaaagacatggataaa
gcctttagtcatataaagaaagtgcgtgacaaaggacagagaagcagcctaaggcgagaa
ataggagagctgcgaaaggaactgaagtccagggaagaggtggccatctcccaaatcctg
aaaagggccagtgttattctagcaaccaacactggatctagtgatgatggtccactgaag
tatttgccaagcgagcatttcgacctggtggtgatagatgaatgtgctcaggctctggag
agcagctgttggattgcactgctcaaagcacgcaagtgcatcctggctggagactacaag
cagctgccacccacaattaaatctcagaatgcagctgctaaaggtctgtctgtgagttta
atggagcggctgattcagaagtacggagactcaatagttcgaatgctgaccactcagtac
cgtatgaacagtgccatcatgcagtgggcctcagagcagatgtaccaagggaaactgact
gcacatccttcagtggagaaacatttattaagggacctggctggtgtgactcatgttgag
gagaccagcatgcctctgctcttaattgacactgctggctgtggtcttaatgaaatggag
gacacagatgagcagtcaaaaggcaatcagggtgaagttgacatagtggcacttcatgtg
aaaaccttgactgaggctggagtgcaggccaaagacattgcagtcattgcaccttataac
ctacaggtagatctgctaagacagaaactctcaaatgagtatcctgacctggagatcaaa
tctgtagatggctttcaaggcagagaaaaggaggcagtgctgctgtctctggttagatct
aatagaaaaggagaggttggatttcttgcggaggacaggaggatcaacgtggcagtaaca
cgtgccagacgacagcttgtagtggtatgtgattcccagactgtccgaaaccatgacttt
ctcaggagcttggttgactacatgtctgagcacggggaggttcgcactgccttcgagtac
ctagaggacctggttcctgaaaactaccaccgcgattttaaagacgaacagaataacatt
aaagcatcttccaccaaaacaaaggcaaaaaaccaacaaggcaagagaaatgagaccaag
cacaataaagtctctgagagcaagagcaaaggaaacggccaatcaaaggatgatccccac
atcagcagtaacctaaagtcaagccttcccaaaccaaaagcagatgatcaaattgagtct
caaattaagaaagaggagatgaggcagcagttgcttatctttctggacaaccaaagtcag
acagagcttcaatttccttcctctctgaattcacatgaacgcctcctagtccaccaactc
tgtgaagagctggaactaaagcatgtgagcaagggaaccggaaaacagcgtcatatcact
gtttccaaaccagtggcagagccagaggagagactggaagaggaatcagtgtccacaagg
ccagaaatccagacttcagaggaactaacagaaaaagaatccaacaggcaaccactaaag
cctgctctagatttgaaaagcttgcatttggagcgtatgcgccgggagcaagaaaaacgg
gaggagaaaattcagagcaaaagacaggagacagagcataaagacagcaaagggccatcc
acgaaaaagaacaaaggtgtaacaaaaggaaaggggaaaatgaaagcaggggctgtggac
gttgctgcagctgctacagctgaggatgattttgatgcactcattgatgctgtggtgaaa
gcagaaagcgtgtgtggcttcatgaagtgtaaagccagtgtgctcacactggggcagctg
tgtgtctactgtaacagacagtactgcctgagtcaccacatacctgaggtccatggatgt
ggagacaaagcgaaggcgcaggctcgcatgagaataagcaaagagggagtgctgtatgct
ggaagcgggcagaaggacaagtccatggatccgaacaaaaaagcatacctgcaacgcaaa
ctagactctaaactcaaagacatggcatcccaaagaaaatccaagtcaaaggataaagaa
cattga
DBGET
integrated database retrieval system
