Pangasianodon hypophthalmus (striped catfish): 113535037
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Entry
113535037 CDS
T05759
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113535037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113535037
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113535037
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
113535037
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
113535037
NCBI-ProteinID:
XP_026783920
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTTTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKKLIERHRYHI
RMLETILRMLDNDSVQVDSIRKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDISQPLVA
TSPPAHTEDEIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDDKKRGRSTDSEFSQSPVKN
GNPSSLSSSSSSSSCSGSSSTSVVSVATVASSSSSGGGGSSLLSNMGGHVQNSCSYSSAI
QQQMQHGQQQHQSKNAINSQSSASASAAPSSILLPSPTSTSSPSSISTPSNQAQPLLTPS
PASSLSHALSLGLAKSGAPTTSGVGQIPGLSLSGMPASRTSMPGPLQGSTPAPYAQAAAS
GTANATVNASVTNSSGVPTAGTNGNSASTGLLGSAPGTTGISSAVLGLGTTPTAVQPSSL
VSPSPVGGGLVQTSSVGVIGSNGGNSISGSATAVGSSGLPRPPSGQKQNGGTTYSAIVAD
SASDSALSSASQLQNNQASTLNSTTNLPKDNGSSLLGSMTLPTSSPSPSYSESKPSGGSL
LNGPHSFTQAADAIKPQEPLSSLKSMAERAAQVSSLEGELSALHLTGVNKVGDWNTRVCN
GSDIFPSSTAPTGPPTAPQSSLSEVNIPPSLGVCPLGSVPISKEQHYQHVMLEAAWTHMP
HPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYL
AAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRY
LEDRDLQ
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaaagaaaactacaaggtgaaattgatcgatgtctaaaaaaagtcgcagaa
ggagtagaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgccaaccaa
aaagagaagtatgaggctgacctcaagaaagagataaagaaattacagcgcctccgagac
cagattaagacgtgggtggcctcaaacgagatcaaagacaaaaggcagctagtggacaac
cgcaaactcatagagacacaaatggagcgctttaaaattgtggagcgagagacaaaaacg
aaagcgtactccaaagagggactcggccttgctcagaaagtggaccctgcgcaaaaagag
aaagaggaggttggacagtggctcacgacaacgatagacacgttaaacatgcaggtggac
cagtttgaaagtgaggtggaatcactctcagtccagacacggaaaaagaaaggagacaaa
gagaagcaggatcggatagacgagctgaaaaagttgattgagaggcaccgctaccacatt
cgtatgctggagaccattttgcgaatgctagataacgactcggtacaggtggattccatc
cgtaagatcaaggatgacgtggagtactacatcgattcttctcaggatcctgactttgag
gagaatgaattcctctatgatgacctggacctggaggatatatcccagccattggttgcc
acatctcctccagctcacacggaggatgaaatcttccagcactccagttctacaccgaca
tccaccacttcgtcttccccaattcctccatccccggctacttgcactacgaattctgag
gatgataagaagcgaggtcgttccacagatagtgaattcagtcagtctccagtaaagaat
ggcaatccatcatctctttcctcgtcctcatcgtcctcttcgtgttcgggatcttcctct
acctcggtggtgtctgtggcgaccgtggcaagcagcagcagctcgggaggcgggggtagc
agcctcctgagcaacatgggaggccatgtacaaaactcatgcagctacagctctgccatc
cagcagcaaatgcagcatggccaacagcaacaccaatccaaaaatgccatcaactcccaa
tccagcgcctctgcctctgcagctccctccagtattctcttacccagtcccacatcaacc
tcttctccttccagtatcagtacacccagcaaccaagcccagcctctgctcactccaagt
ccagcttccagcctgagccatgctctcagcctgggcctagccaagagtggtgcaccgacc
accagtggtgttggccagattcccggccttagtctttcagggatgccggcgtccaggacc
agcatgccagggcccctgcaaggttccaccccagcaccttatgcccaggctgctgcatcc
ggcactgccaatgccacagttaatgccagtgtcacaaactccagtggagttccaacagct
ggcacaaatggaaacagtgcttcaacaggcctcttggggtcagcaccaggcactacaggg
atcagcagtgcagtcttaggtctggggaccacaccgactgcagtgcagccctcgtccttg
gtttcacccagccctgttggagggggattggtgcagacgagcagcgtgggcgttattggg
agtaatggtggaaactctatatcaggaagtgcaacggctgtggggagctctgggcttcca
cggccacctagtgggcagaagcagaatggcggcacaacctatagtgccatagtagcagat
agcgcatctgattctgccctcagcagtgccagccagttacaaaacaaccaagcctcaacc
ttaaattccacaaccaatctgcctaaggacaatgggtccagccttctggggtctatgact
cttcctaccagttcaccatcgccctcgtatagtgagagtaaaccaagtgggggcagcctg
ttgaatggacctcactccttcacacaagcggctgatgccatcaagcctcaggaaccgctc
agttctctgaaatcgatggcagagagagcagctcaggtctcaagtttagaaggagaactc
tctgcgctacatctcactggagtaaacaaagttggagattggaatacacgagtgtgcaat
ggttcagatatcttccctagttccacagccccgacaggtccccctacagccccccagtct
tctctttcagaggttaacattcctccatcgctgggcgtctgtcctctgggttctgtcccc
atctccaaagagcagcactaccagcacgttatgctagaggcagcctggacacacatgccc
cacccgtcagactcggagaggatcaggcagtacctgatgaggaatccctgtcctacgttg
cctttccatcaccaggtgccaccaccacactcagactctgtggagttctaccagaggctc
tccacggagactctcttcttcattttctactaccttgagggcacaaaggctcagtatttg
gcagccaaagccttgaaaaagcagtcctggaggttccacacaaagtacatgatgtggttc
cagaggcacgaggaacctaagaccatcactgatgagtttgagcaggggacatacatttac
tttgactacgagaagtggggccagaggaagaaagaaggattcacgtttgagtacaggtat
cttgaggaccgggacctccagtga
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