Pangasianodon hypophthalmus (striped catfish): 113535334
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Entry
113535334 CDS
T05759
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phyp01009
]
113535334 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113535334 (hdac6)
04131 Membrane trafficking [BR:
phyp04131
]
113535334 (hdac6)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113535334 (hdac6)
Enzymes [BR:
phyp01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
113535334 (hdac6)
Protein phosphatases and associated proteins [BR:
phyp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113535334 (hdac6)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
113535334 (hdac6)
Membrane trafficking [BR:
phyp04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
113535334 (hdac6)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
113535334 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
113535334
NCBI-ProteinID:
XP_026784384
LinkDB
All DBs
Position
Unknown
AA seq
1088 aa
AA seq
DB search
MDSTSDQTPKGSKRSPKKTPQSSGKRESSKRSQKPSLQEARNKGRRDRGKAEEEMTNKLK
NMGLHDKLKATGTGLVYSDVFSRYRCLWDSSHPECPERVTAIVGMMETEGLLSRCVQVET
RAASEEELSLVHTKEYIDLMKSTQTMTEEELKCVSDRYDSVYLHPDSFSCACLAAGSVLQ
LVDKVMTSELRNGFAVCRPPGHHAQAEQMNGYSMFNNVAVAACYAQKRHGVQRVLIVDWD
VHHGQGIQYAFQEDPSVLYFSVHRYEEGSFWPHLPEGDSSVVGSGQGEGYNINVPWNKTA
MEDGDYVSAFQRILLPVAYEFQPQLVLVAAGFDSVAGDPKGEMCASPQCFSVLTHMLMGL
AEGRIVLALEGGYNLQATAEAACASLRSLLGDPCPHLSTPGAPSESALKSISKTVSALYP
FWTSLQTLEGGPLSEAEPLPSAVCVEKLESCVQVTGLVYDERMMEHHNMWDSHHPELPQR
IFRIFSHHEDLGLVERCRRIPARLATEEELALCHGSQHIATIKSTEQMKPRDLNRLGDEY
NSIYISKESYKCALLAAGACFNVAQSILTGQVRNGVAIVRPPGHHAERDTACGFCFFNTA
ALTARYAQTITHNALRVLILDWDVHHGNGTQHIFEDDDSVLYISLHRYDEGSFFPCSEDA
DYDKVGRGKGAGYNVNIPWNRTKMGDPEYLAAFHHVVMPIAREFAPELVLVSAGFDAARG
DPLGGYQVTPECYAHLTHQLLSLAAGRVLVILEGGYNLNSISTSMAMCTSMLLGDAPPLL
PPLPPPHPSAAISINNVLRAHAPYWRSLRIQIPESLRLSLPSPKPKIKHTPAGKGKNSPA
QVTPQQQHQRTPVTTSPASPPTDQEDSGLDELTQGLRSLDLSTSTISASSSPASVPVGGA
RPKVKPSPQRDSSAVQEVLSVGVIERGIEDGDVKAESTPIKQEKQSVPQTAEESDAGAVC
DQESPALEGACGYTKKSIFELVCGAVDLAGDTMYVVDPLAWCPHLESVRPVPAGGIDVFR
PCEECGAETENWICLCCYKVLCGRFVNEHMVAHGQISSHPLVLSFADLSVWCYSCESYVH
NKVGAYEL
NT seq
3267 nt
NT seq
+upstream
nt +downstream
nt
atggattctacatcagatcaaactccgaagggttcgaaacgctctccaaagaaaacgcca
cagagctccggcaagcgggaaagcagcaaacgcagccagaaaccaagtctccaggaggct
agaaataaaggtagaagggaccgaggcaaagcagaagaggagatgaccaacaaactcaaa
aacatgggtttgcatgacaagctgaaggcaactggaactggcctagtttactccgatgtc
ttttcccgttatcgctgcctgtgggactccagtcaccccgagtgtccagagagagtgacc
gctatagtggggatgatggagacggaggggctgctgtctcgctgtgtgcaggtggagacg
agagctgcatcagaggaggaactttctcttgttcacacgaaggaatacattgatctcatg
aagtccactcagacgatgacggaagaggagctgaagtgtgtctctgatcgctatgactcc
gtctacctccatcctgactctttctcatgtgcctgtctagctgccggctctgtcctccag
ctggtcgacaaggtgatgacatcggagctacgcaatggctttgccgtgtgcaggcctcca
ggacatcacgcccaggctgagcagatgaacggatactccatgtttaataacgtagcagtg
gcagcgtgttacgctcagaaacggcacggcgtccagcgggttctgattgtagactgggat
gtacatcatggtcagggaatccagtacgccttccaggaggatcccagtgtcctgtatttc
tccgtgcatcggtatgaggagggctcgttctggcctcacctgcccgagggagacagcagt
gttgtgggttcaggacaaggcgagggctacaacatcaacgtgccctggaacaagacagcg
atggaggacggagattacgtctcagcattccagagaattctgctgcctgtagcctatgag
tttcagcctcagcttgtgttagtagccgctggctttgactctgtggctggtgatcccaag
ggtgagatgtgtgcgagtccccagtgtttctctgtactgacccacatgctgatgggtcta
gccgagggccgaattgtgctcgctttggagggaggctataacctgcaggccacagcagag
gcagcttgtgctagtttgaggtcactcttgggtgacccctgccctcatctgagcactcca
ggagctccgagtgagagtgctctgaagtccatctcaaagacagtttctgctctgtatcca
ttttggaccagcctgcagactctggagggcggccctctttctgaggcagagcccttgccc
tcagccgtgtgtgtcgagaaactggaatcctgtgtccaagttactggactcgtttatgac
gagcgtatgatggagcatcacaacatgtgggacagccatcaccctgagctccctcagaga
atcttccggatcttctcccaccatgaggatttggggctggtggagcgttgccggcggata
ccggctcgtttagccacagaggaggagctcgcgctttgtcacggatcacagcacatcgct
acgataaagagcaccgagcagatgaagcccagagacctgaacaggctcggagacgaatat
aattccatctacatcagtaaagagagctataagtgtgcactactggcagctggggcatgt
ttcaatgtagctcagtccatcctcactggtcaggtgaggaacggggtggctattgtacgt
ccccctgggcatcacgcagagagagacaccgcctgcggcttctgcttcttcaacacggct
gccctgaccgcccgctatgctcagaccattacccacaatgccctgcgtgtcctcatcctt
gactgggacgtgcaccatggcaacggcacccaacacatctttgaagatgatgacagtgtg
ctctacatctctctccatcgctatgatgaaggctcattcttcccctgctcagaggacgcc
gactacgataaagtgggccgagggaaaggtgcgggttacaacgtcaacataccctggaac
agaaccaagatgggcgacccagaatatctagcggccttccaccatgtggtgatgccgata
gcacgagagtttgctccggagctggtgctggtgtcggccgggtttgatgccgctcggggt
gatccattaggggggtaccaggtgaccccggagtgctacgcccacctcacacaccagctg
ctgagtctagcagcaggacgagtgcttgtcattttagagggaggttataacctcaactcc
atctccacatccatggccatgtgcaccagcatgctcctgggtgacgcgcccccgctgctg
cctcctctgccccccccgcaccccagcgccgccattagcatcaacaacgtcctgcgagca
cacgccccctactggagatctctcagaatacagattccagagtctctacgtttgtccttg
ccttctcctaaacccaaaatcaagcacacgcctgcaggaaaaggcaaaaattctcctgct
caggtcacccctcaacagcagcaccaacgtaccccagtgacgacttcaccagcatcgccc
cctactgatcaggaggactcggggctggacgagctcactcaaggcctgcgctctctggac
ctgagcacatctaccatatctgccagttccagccccgcctctgtccctgtgggcggggct
agacctaaagtgaagcccagcccacagagggactcctcagcagtgcaggaggtgttgtct
gttggagtgatagaaagaggtatagaggatggtgatgtaaaagctgagtccacgcccatc
aaacaggagaaacagtcagtaccacagacggcagaagaatcggacgctggggccgtgtgt
gatcaggagagtcctgcgctggagggagcgtgtggttacacgaagaaatccatcttcgag
cttgtgtgtggagccgtggacctggctggggacacgatgtacgtggtggaccctttggcg
tggtgcccacacttggagtcagtgcgtccagtgcctgcagggggcatcgacgtgttccgg
ccgtgtgaggagtgcggcgccgaaacggagaactggatctgcctctgctgctataaggtt
ttgtgtgggcgttttgtgaacgagcacatggtggcccatggtcagatatcctctcaccct
ctggtcctgagctttgctgatctatcagtgtggtgctactcctgcgagtcctacgtccac
aacaaggtgggtgcatatgagctctga
DBGET
integrated database retrieval system
