Pangasianodon hypophthalmus (striped catfish): 113535617
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Entry
113535617 CDS
T05759
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
phyp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113535617 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
113535617 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
phyp01009
]
113535617 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113535617 (smarcb1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113535617 (smarcb1)
Protein phosphatases and associated proteins [BR:
phyp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113535617 (smarcb1)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113535617 (smarcb1)
SWI/SNF complex
113535617 (smarcb1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113535617 (smarcb1)
PBAF complex
113535617 (smarcb1)
SWI/SNF complex
113535617 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
113535617
NCBI-ProteinID:
XP_026784858
LinkDB
All DBs
Position
Unknown
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKI
AASSHDHGYTTLATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQTEVLVPIRLD
MEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLTFVPAIASAIRQQIESYPTDS
ILDEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacattcggtcaaaagccgataaaatttcagctggaagaagatggc
gatttttacatgataggttcagaggttggaaattatctgcgtatgttcagaggttcgctg
tacaaacggtacccatcgttgtggcgcagactcgcatcggtagaggagagaaaaaagatc
gcagcatcgtcacacgatcatggttacacaactttagccaccagtgtgactctgctgaag
gcgtctgagtgtgaagagatcttcgagggcaatgatgagaagtacaaggcagtgtccatc
agcacagaacctccagcctacctcagggagcagaaggccaagaggaacagtcagtgggtc
cccacgctccccaacagttcccaccacctggacgctgtgccttgctccaccacgatcaac
cgaaaccgcatgggacgcgacaagaaaaggaccttccccctgtgttttgatgaccacgac
ccagcggtgatccatgaaaatgcctcacagacggaggttctggttccaatccgattggac
atggagatagacggccagaagctcagagacgccttcacctggaatatgaatgagaagctg
atgacgccagagatgtttgcagagatactgtgtgacgatttggacctgaacccgctgacg
ttcgtcccagccatcgcctctgccatccggcagcagatagagtcctaccctaccgacagc
atcctggacgaacagaccgatcagagagtcatcatcaagctgaacatccatgtgggaaac
atttccctggtggaccagtttgagtgggacatgtctgagaaggagaactctccagaaacg
tttgcgctgaagttgtgctctgagctcggcctcggaggagagttcgtcaccaccatcgcc
tacagcatccgcggccagctcagctggcatcagaggacgtacgccttcagtgagaacccc
ttgccgacggtagagatcgccattcggaacacaggcgatgccgatcagtggtgccccctg
ctggaaacgctgacggacgcagagatggaaaagaagatcagagatcaggacagaaacaca
aggcgcatgcggcgacttgccaacaccgcccccgcatggtag
DBGET
integrated database retrieval system
