Pangasianodon hypophthalmus (striped catfish): 113536034
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Entry
113536034 CDS
T05759
Symbol
vps50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113536034 (vps50)
Membrane trafficking [BR:
phyp04131
]
Protein recycling
Others
EARP complex
113536034 (vps50)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
SUV2_N
Motif
Other DBs
NCBI-GeneID:
113536034
NCBI-ProteinID:
XP_026785513
LinkDB
All DBs
Position
Unknown
AA seq
965 aa
AA seq
DB search
MQKIKSLMSRQGLKSPQESMADMSPVESFRVPSKEELRELREQPIDPQAEQEIIDSIEEV
YFSNDSIDMVQYELEKLPPDLNLQELEEYRDKLKRQQAAVSKKVADLILEKQPSYVKELE
RVTSLQTTLQLAAVICTNARRQLAFAKEGFTEASLGLLANQRRRQLLTGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKTCKHFDVAHYTRVQHAYSLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNA
DTKFQKMQYKDLCTHITPDSYIPCLTDLCKALWEVMLSYYRTMQWHEEHDKEEVKDADTD
GTSTEGSEESTVGHSYVKKKLEHGLSRIWQDVQLKVKAYLLGTDMSNFKYDDFIVVLDVI
SRLMQVGEEFCGSKSEVLQESIKRQSVNYFKNYHRTRLEELRMFLENETWELCPVKSNFS
ITQLHEFKFMGQCRSPSVSPSRQPASSDPDELSLFEQYIQGGNPFEMQIDNKEEESEDVL
ASNGYESEELEKSVYQDYDSDSDVADELKQDFVDEQTGDVPNKSVSRETLRSRKRSDYSL
NKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHCVSQLFDYYLYAVYTFFGRNDM
YESSGLGLISSRLRTTLNRIQESLIDMEAGGENAATHGPSEDRKEKVPSPHLSQLVVLTA
SSTLYGLAERVVATESLVFLAEQFELLQPHLDTMMPPAKKPFLQQFYSQTVSTASELRKP
TYWIVAAKAIDYEQMLLLMAGVKWDIKEIMSQHNVYVDVLLKEFEEFNKRLGDVSKQVRI
PLPVSNVLWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDLRPIPD
KEFVETYIKAYYLTENDMEQFIKNHREYSMKQLANLVNVCLGSHINKKARQKLLAAIDDI
DRPKR
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaaattaagtctttaatgtcccgacagggcttgaaaagccctcaagagagcatg
gcagatatgagtcctgtggagagcttcagggtcccgagcaaggaggagctgagggagctg
agggagcagcctattgatccacaggccgagcaggagatcatcgacagcatagaggaggtg
tacttctccaacgactccattgacatggtgcagtacgagcttgagaaacttccccctgat
ctgaacctgcaggagctggaagagtacagagataagctgaagagacagcaagcagccgtt
tcaaaaaaagttgctgaccttattctagagaaacagccgtcctatgttaaggaactggag
cgagttacatccctgcaaaccacactgcaactagctgccgttatctgcaccaatgctcga
aggcagcttgcttttgctaaagaaggcttcaccgaagcaagtcttggactcctggccaac
cagagacgcaggcagctgctgacaggattgctaaagtctttaaggaccataaagacactg
caaaggacagatgtcagactgagtgagatgctggaggaggaggactatccaggtgcaatc
cagttgtgcttggaatgtcagaaggctgccagcactttcaagcactacagctgcataagt
gagttgaactcgaagctgcaagacactctggaacaaatcgaggagcagctggatgtagcg
ctgtcgaaaacctgcaagcactttgacgtcgctcactacaccagagttcagcatgcgtac
tcgctattgggcaagacacagactgcgatggatcagcttcacatgcacttcacccaggcc
attcacaacaccgtgttccaggtggtgctgggatatgtggagctgtgtgctggcaacgct
gacaccaaattccagaagatgcagtataaggatctgtgcacgcacatcactccagacagc
tacatcccctgcctgactgacctgtgcaaagcattgtgggaggtgatgctcagttactac
cgaaccatgcagtggcatgaggagcatgacaaagaggaggtgaaggatgctgacacagat
ggtactagcaccgaaggctcagaggaatctacagtgggccacagctatgtgaagaaaaag
cttgaacatggcctaagccggatttggcaggacgtccagctgaaagtgaaagcctattta
ctggggacggacatgtcgaacttcaagtatgatgacttcattgtggtgttggacgttatt
agcaggctaatgcaggtgggagaggagttctgtggcagcaagtctgaggtgctacaggag
tcaattaagaggcagagtgtgaactactttaagaactatcacagaacacgcctggaggag
ttgcgcatgtttctggagaatgaaacatgggaattgtgtcctgtgaagtccaacttcagt
atcactcagcttcacgagtttaagttcatgggccagtgtcgttcgccgtccgtgtctccg
agcaggcagccagcctccagtgaccctgacgagctgtctctctttgagcagtatattcag
ggaggaaaccctttcgagatgcagatcgacaataaagaagaggagagtgaggatgtcctg
gcatccaatgggtacgagtctgaagagctggagaagagtgtgtatcaggactacgacagt
gacagtgatgtggcagacgaactgaagcaggactttgtggatgagcagactggagatgta
cccaacaagagcgtgtccagagagactctacgcagcagaaaaagatccgactacagcctg
aacaaagtcaacgcccctatcttgaccaacaccactcttaacgtgatccgtctggtcggc
aaatacatgcagatgatgaatattttaaaacccatcgccttcgacgtcatccactgcgtg
tcacaactgttcgactattacctgtacgccgtgtacaccttcttcggccggaacgacatg
tatgaatcatccggactggggctgattagcagtagactgaggacgacactcaaccgcatc
caagagagtctcatagacatggaggcaggaggagagaacgcagccacccacggaccctct
gaggacagaaaggagaaggtgcccagccctcacctgagtcagctggtggttctgacggcc
agcagcacgctgtatgggctggcagagcgcgtagtcgccacagagtcacttgtgttcctg
gctgagcagtttgagctcctccagcctcatctggacaccatgatgcctccagccaagaaa
cctttcctgcagcagttctactcccagacggtgtccacagccagcgagctacgcaagccc
acttactggatagtggcagctaaagccattgattatgagcagatgctgctgctgatggca
ggagtgaaatgggacattaaagagataatgtcgcagcacaacgtctatgtggatgtcctt
ttaaaggaatttgaggagttcaataaaaggcttggcgatgtctccaaacaagtgcggatc
cccctccctgtttcaaacgtcctctgggagcactgcatccgtctggctaaccgaacacta
gtggagggctatgctaacgtaaagaagtgcagtaacgagggccgagcactgatgcagctg
gacttccagcagttcctcatgaagctggagaagctcactgacctcagacccatccctgat
aaggagtttgttgagacctacattaaagcctactacctgactgagaatgacatggagcag
tttattaagaaccacagggaatactccatgaagcagctggccaacctggtcaacgtctgc
cttggctcccacatcaacaaaaaggctagacagaaactcctcgcagctattgacgacatt
gaccgaccaaaaagataa
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