Pangasianodon hypophthalmus (striped catfish): 113536189
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Entry
113536189 CDS
T05759
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp00260
Glycine, serine and threonine metabolism
phyp00630
Glyoxylate and dicarboxylate metabolism
phyp00670
One carbon pool by folate
phyp01100
Metabolic pathways
phyp01200
Carbon metabolism
phyp01230
Biosynthesis of amino acids
phyp01240
Biosynthesis of cofactors
phyp04981
Folate transport and metabolism
Module
phyp_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
113536189 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
113536189 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
113536189 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
113536189 (shmt1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
113536189 (shmt1)
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Paralog
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
SHCBP_N
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-GeneID:
113536189
NCBI-ProteinID:
XP_026785819
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All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MAHNGCCIDKDTWESHNRMLQEALSTNDPEVFEIIKKEKKRQTYGLELIASENFTSRAVL
EALGSCMNNKYSEGYPGQRYYGGTEHVDELERLCQQRALKVYGLDPEKWGVNVQPYSGSP
ANFAVYTAVVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNQETGYID
YDRLEENARLFHPKLIIAGTSCYSRNLDYSRLRKIADENGAYLLADMAHISGLVAAGVIP
SPFDYCDIVSTTTHKTLRGCRAGIIFYRKGVRSVDAKTGKESLYNLESLINQAVFPGLQG
GPHNHAIAGVAVALKQALTPEFKVYQLQVLANCKALAAALMEKGYKIVTGGSDTHLILLD
LRPNGTDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRLGSPALTSRGLVEEDFRLVA
EYIHRCIQLTVEIQTSMNPKATLKEFKETLARDENYQKRITEIREEVEAFAGKFPMPGLP
EL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcacacaacggttgttgcattgacaaggatacttgggagtctcacaacaggatgctg
caggaagcactcagtaccaatgatcctgaggtatttgagatcattaagaaggagaagaag
agacagacgtacggtttagagctcattgcatctgagaacttcacaagtcgtgctgttctg
gaggctctgggctcgtgcatgaacaacaaatattcagaaggatatcctggccagagatac
tatggtggcacggaacacgtggatgaactggagcgtctctgtcagcaaagagcattaaag
gtttatggtcttgacccggagaaatggggtgtgaacgtgcagccttattctgggtcacct
gccaacttcgctgtgtacacagcagtagtggagcctcatgggaggatcatgggtctggat
ctccctgatggtggtcacttgacccatggatttatgacggacaagaaaaaaatttctgcc
acctccattttctttgagtcaatgccatacaaggtcaatcaagagactggttacattgat
tatgaccgactagaggaaaatgctcgtctcttccacccaaaattgatcattgcagggacc
agttgctactcgcgtaacctggattatagtcgcctgcggaagatagcagatgagaatggg
gcttacctgctggccgacatggcacacattagtgggcttgttgcagccggcgtgattcca
tccccctttgattactgtgatattgtttccacaactacccataagaccctgagaggctgc
agggcagggatcatcttttacaggaaaggtgtgcgcagtgtggatgcaaaaacagggaag
gaatctctttacaacctggagagtttgatcaatcaggctgtgtttcctgggctgcaggga
ggacctcataaccatgccattgcaggagtggctgtagcactgaagcaggcactgactcca
gagttcaaggtctaccagttacaagtgctggcaaattgcaaggctttggcagcggctctg
atggaaaagggctacaaaattgtcaccggtggttctgatactcatctaatcttgcttgac
ctccgtccaaacggaactgatggtggaagagcagagaaggtgctggaggcctgtgctatt
gcttgtaacaagaatacctgcccaggtgataagagtgccttgcgcccaagtggtctccgt
ttaggctctcctgctctcacgtcacgaggactagtggaggaggatttccgcctggttgca
gaatatattcacagatgcattcagttaactgtggagatccagacaagcatgaaccccaaa
gccacattgaaggagttcaaagaaacattggctcgggatgagaactatcagaagagaata
acagaaatccgagaggaggttgaggcttttgctggaaaattccccatgcctggactgcct
gagctatga
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