Pangasianodon hypophthalmus (striped catfish): 113536298
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Entry
113536298 CDS
T05759
Symbol
cpsf4
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113536298 (cpsf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113536298 (cpsf4)
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113536298 (cpsf4)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
113536298 (cpsf4)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
113536298 (cpsf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCCH_2
zf-CCHC
zf-CCCH_4
zf-CCHC_3
Nab2-like_zf-CCCH_
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
113536298
NCBI-ProteinID:
XP_026785968
LinkDB
All DBs
Position
Unknown
AA seq
271 aa
AA seq
DB search
MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFMRSACLKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPDCRHRHTRRVICVNYLVGFCPEGKSCKFMHPRFELPMGTNEQPP
LPQQAQTQQKQNAQNLNRSSLSLIQLTSNNSIANTNHQKPSHILGASQPQNNTGGPRGPR
PLDQVTCYKCGEKGHYANKCTKGHLAFLSGQ
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaataattgccagcgttgatcatataaagtttgatctggagattgcagtcgag
cagcagttaggagctcaaccgctgccgtttcctggaatggacaaatcaggcgcggctgtg
tgtgagtttttcatgaggtctgcttgcctaaaaggtggaatgtgtccttttcggcacatt
agcggagaaaagacggtggtttgtaaacactggcttcgaggattgtgcaagaaaggagat
cagtgcgaatttctgcacgagtatgacatgacgaagatgccagaatgctatttctactcc
aaatttggagaatgcagtaataaagaatgtcctttcttacatattgacccggaatctaag
attaaagactgtccgtggtatgaccgagggttttgcaagcacggccccgattgccgacac
agacacacacggagggtcatctgtgttaattatctagtaggcttctgtcctgagggcaag
tcatgcaagtttatgcacccacgctttgagctgcctatggggacaaacgaacagccacct
ctgcctcagcaagcccagacccagcaaaagcaaaatgcacagaacttaaacagatcatcg
ttgtcactgatccagttaaccagcaacaactccattgccaacaccaaccatcaaaaacct
tcacacattcttggagcttcacagcctcagaataacacaggcggcccccgaggccctcgt
ccactcgaccaggtcacatgttacaagtgtggagagaagggacattacgcaaacaaatgc
acaaaaggacacctggctttcctaagtggacagtaa
DBGET
integrated database retrieval system
