Pangasianodon hypophthalmus (striped catfish): 113536521
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Entry
113536521 CDS
T05759
Symbol
trmt13
Name
(RefSeq) tRNA:m(4)X modification enzyme TRM13 homolog
KO
K15446
tRNA:m4X modification enzyme [EC:
2.1.1.225
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
phyp03016
]
113536521 (trmt13)
Enzymes [BR:
phyp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.225 tRNA:m4X modification enzyme
113536521 (trmt13)
Transfer RNA biogenesis [BR:
phyp03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
113536521 (trmt13)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRM13
zf-TRM13_CCCH
zf-U11-48K
Methyltransf_32
OrgC
Motif
Other DBs
NCBI-GeneID:
113536521
NCBI-ProteinID:
XP_026786304
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MAAVVSDGVSAPLPGRCAFYVAKKKRYCKMVVGNGKKFCGEHGNADADSERKRIPCPLDP
KHTVFEDSLAKHLKKCNSKEKPKPVYYVKDINAGSVTEEENTIDEVAIAERSKEELDSLI
QKLKTALKGLNTESDTSLLSHPALNEALNDPKNGNFAFKHLKQQASILGNMEALELLGSE
RCYVEFGAGKGKLSHWIHVALQEAKNVHFLLVERSSTRFKVDGKHKNTDSTFDRLQVDIQ
HLDLSRVPFLQEKRLPVIAVGKHLCGAATDLALRCLFERSAKDKDSEPPTKRIKLQEEEE
GGEEAMLGSESSEEVVVSGLAVALCCHHRCDWRHYVGKDFFRERGLGATEFSAFQRMSSW
ATCGMSRIKSSLNPEKSSQEYFKDEEEEEGEHEGSSENIPDHLNNAVSAEEREHIGRLCK
TLINHGRLHYLQQRGFKSSLRYYTSRDVSLENVLLTALPS
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atggctgcggtcgtgtcagacggagtttcagctcctttacctggaagatgcgccttttac
gtggcgaaaaagaaacgttactgcaaaatggtggttggaaacggaaaaaagttttgcggt
gaacatggaaatgcagatgcagatagtgagagaaaacggatcccctgccctctggaccca
aagcacactgtgtttgaagacagtttggcaaaacacctgaaaaagtgtaattcgaaggag
aagcccaaacctgtttactatgtgaaagacatcaatgctgggtctgtaactgaagaggaa
aacaccatagatgaggtggccattgctgagcgatctaaagaggagctggatagtcttatt
cagaaactgaagactgcattgaaaggattaaacacagaatctgacactagccttctctct
catccggctttaaacgaagctcttaacgatcccaagaatgggaactttgcttttaaacat
ctcaagcagcaggcctcgatcctggggaacatggaggctctggagctgctcgggtcagag
aggtgttatgtggagtttggtgctggaaaaggtaaactctcccactggattcacgttgcc
cttcaggaagccaagaacgtccacttcctgttagtggagaggtccagtactcgctttaag
gtagatggcaaacacaaaaacacagactcgacattcgacaggctgcaggttgacattcag
cacctcgacttaagcagagtgccatttttacaagaaaagcgacttcctgtaattgcagtg
ggcaaacacctgtgtggcgcagcaacagatttggctctgcgatgtttatttgaacgcagt
gcaaaagacaaagacagtgagcctcccactaaacgtataaaactgcaagaagaagaagaa
ggaggtgaggaggcgatgcttgggtctgagagcagcgaggaggttgtggtgtcggggctc
gctgttgcactctgctgccatcatcgctgtgactggaggcattatgtaggaaaggacttt
ttccgggagcgaggtcttggagccacagagttttcagctttccagcgcatgtccagctgg
gcaacatgtggcatgagcagaatcaaatcctccttaaatcctgagaaatcatcacaagag
tacttcaaagatgaagaagaagaagagggtgaacatgaagggagttctgaaaacatacct
gatcatctcaacaatgctgtttcagcagaggagcgtgagcacatcggacgcctgtgcaag
acgctgatcaaccacggcaggctgcattacctccagcagcgaggcttcaaatccagcctc
agatactacaccagccgagacgtgtctttagagaacgtgcttctgactgcgcttcccagc
taa
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