Pangasianodon hypophthalmus (striped catfish): 113536617
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Entry
113536617 CDS
T05759
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03030
DNA replication
phyp03410
Base excision repair
phyp03420
Nucleotide excision repair
phyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113536617 (rfc4)
03410 Base excision repair
113536617 (rfc4)
03420 Nucleotide excision repair
113536617 (rfc4)
03430 Mismatch repair
113536617 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113536617 (rfc4)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113536617 (rfc4)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113536617 (rfc4)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
113536617 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
113536617 (rfc4)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
113536617 (rfc4)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
113536617 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
113536617 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
RCF1-5-like_lid
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_16
AAA_22
AAA_11
AAA_30
DUF815
Gp44_lid
Mg_chelatase
AAA_24
SLFN-g3_helicase
AAA_14
AAA_5
AAA_28
RuvB_N
AAA_19
DNAX_ATPase_lid
KH_DUF2096_C
ResIII
Cdc6_lid
AAA_7
UPF0176_N
Motif
Other DBs
NCBI-GeneID:
113536617
NCBI-ProteinID:
XP_026786476
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MQAFLKGATQGVKPQKDKATASGSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVKN
FAQLTVAGTRPDGKSCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYVSR
IIEPLTSRCSKFRFKPLANEVQRERLVEICEKENLKYSKEGIDALVKVSEGDLRKAITLL
QSTARLSTEKEITESIVVEISGVVPPKVIENLLQTCYKGNFEKLEIAVKNMIDEGYAATQ
ILSQFHDVIIEEKLGDKQKSVITEKMAVVDKCLADGADEYLQLLNLCSVIMQQATQSA
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcttttctgaaaggagctacacaaggtgttaaacctcagaaggacaaagccaca
gcttcaggcagtggagagaataagcgacagaagccagtgccttgggtggagaaatacaga
cctaagtgcgtggatgaagttgcttttcaagaggaggtcgttgcagtattgaagaaatca
ctagagggtgctgatctcccaaatcttctgttttatggcccacctggaacaggaaagacc
tccactattcttgctgctgccagggagctttatggaccagagctttaccgacagagagtg
ctggaactgaatgcctcagatgagagagggattcaggtgattcgggagaaagtgaagaat
tttgctcagctaacggtggctggtacgcggccggatggaaaatcatgtcctccatttaaa
atcataattctggacgaggcggattccatgaccaatgcggcccaggccgctctgaggcgc
accatggagaaggagtcacgcacaacccgcttctgcctcatctgtaactacgtcagcaga
atcatcgagcctttgacgtctcgctgctccaaattccgcttcaaacccctcgccaatgag
gttcagcgggagcgtctggtggaaatctgtgagaaggagaatctcaaatacagcaaagag
gggattgatgcgctggtcaaagtgtcagagggagatctccggaaagctataacgcttctg
cagagcacagccagactcagtacagagaaagagatcacagagagcatcgtcgtagagatc
tcaggggtggttccacccaaagtgattgaaaatctgcttcaaacctgttacaaaggcaac
tttgaaaaattagagattgctgtgaagaatatgatagatgaaggctacgctgctacacag
atcctcagccagttccatgacgttattatagaggagaaactgggtgataaacagaagtct
gtcatcactgaaaagatggcagttgttgataagtgcttggcggacggagctgatgaatac
ttgcagctgctgaacctctgctctgtgatcatgcagcaggccacgcagagcgcctga
DBGET
integrated database retrieval system
