Pangasianodon hypophthalmus (striped catfish): 113536630
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Entry
113536630 CDS
T05759
Symbol
sox6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113536630 (sox6)
Transcription factors [BR:
phyp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
113536630 (sox6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
DUF6415
Motif
Other DBs
NCBI-GeneID:
113536630
NCBI-ProteinID:
XP_026786495
LinkDB
All DBs
Position
Unknown
AA seq
830 aa
AA seq
DB search
MPSSAEVVSVGEERGPVAEEDRLRIMSSKQATSPFASGADVGEDGAGQERLVWEKDEGTE
PLAAPQLPIHSLLHGKMHGEELPPVSSSVPPESDWDSLVSAQQRMESDSNKVCSLYSFRN
NSTSPHKPEEGARERGDLLGASAFGTPERRKGSLADVVDTLKQKKLEEMTKTEQDETSCM
EKLLSKDWKEKMERLNTSELLGEIQEPERDCFSQTFSDPSVLTFLKNHTPSTPESLAEKE
RQLSTMITQLISLREQLLAAHDEQKKLAASQMEKQRQQMELARQQQEQIARQQQQLLQQQ
HKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGMSYKPGDNYPVQF
IPSTMAAAAASGLNPLQLQQLYAAQLASMQLSPGAKMAPLPQPPNSAGPLSPGPKSEKRS
SSPLGQVKEEGTQPLNLSARPKTAEPVKSPMSPTHSLFPGSKSSPNSQPKSGGIPSPLGL
GRGSSLDILSNLNSTALFGDQDAVMKAIQEARKMREQIQREQLQHHQQGMEAKLSALSGL
GLNNCRADKERVHFESLGHHLGKLGDDGKIGQRVIDLTRPEDLDGSKELNGSADKPQQYY
CWPTGGASTTEARVFRESRGRNPNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISK
ILGSRWKAMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIIDGKKLRIGEYKQM
MRSRRQEMRQFFTVGQQPQTQLPISSSAGVVYPGAISMTSDCSSNSASPEPTVPVIQSTF
GMKMEPSVPSVVPSEPVNGEDDMDMYEDFEDEPKSDYSSENEAQEPVSAN
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgccatccagtgctgaagtggtgagcgtcggagaggaaagagggccagtggctgaggag
gacagactcagaatcatgtcttccaaacaagccacctctccgtttgcctcgggtgcagac
gtcggtgaggacggagctggtcaggagcgcctggtttgggagaaggatgaaggcacagag
ccgctggcagcaccacagctgccgattcacagcctgctgcacggcaagatgcacggcgag
gaactgccacccgtcagcagcagcgtgccacctgaatccgactgggacagcctggtgtcg
gcccagcagcgcatggagtcagacagcaataaagtatgttccctctactccttccggaat
aactctacctctccgcacaagccggaggagggggcacgggagcgaggtgacctgctggga
gcctctgccttcggaacgccggagcgccgcaaagggagcctggccgacgtggtggacaca
ctgaagcagaagaagctggaggagatgacaaagacagagcaagatgaaacctcctgcatg
gaaaaactgctttctaaagactggaaagagaaaatggagagactgaacacgagcgagctt
ttgggagaaatacaagaaccggagcgagactgcttctctcagacgttctcggacccgagt
gtcctcaccttcctaaagaaccacacaccaagtactccagaaagtctggctgagaaagag
aggcagctttcgacgatgatcacgcagctgatcagcctgagagagcagctcttggctgcc
cacgatgagcagaagaagctggcggcctcgcagatggagaagcagcggcagcaaatggag
ctggctcgacagcagcaagaacaaatcgccagacagcagcagcaacttcttcagcagcag
cacaaaatcaatctccttcagcagcagattcagcaggtccagggtcacatgcctcctctc
atgatccccatttttccacacgaccagcgcactctggccgctgccgccgccgcccagcag
ggcttcctcttccccccaggcatgtcctacaagccaggtgataactacccggtgcagttc
attccttccacaatggcagctgccgccgcgtcaggactcaatcctcttcagctccagcaa
ctgtacgccgcccagctggccagcatgcagctctctccaggagccaagatggcgccactg
ccccagccacctaattctgcagggccactctcacctgggcccaagagtgagaagagatcc
tccagcccactgggccaagtcaaggaggagggaacgcagcccttgaacctctcggcccgg
cctaagacagctgagccagtgaaatcccccatgtccccgacacacagcctgttcccgggc
agcaagagcagtccgaacagccagcccaagagtggaggcatccctagtcccctcggcttg
ggccgaggatcatccctcgatatcttgtctaacctgaactccacggcactatttggagac
caggatgctgtgatgaaggccatccaggaggcgaggaaaatgagggagcagatccaacgt
gagcagctgcagcatcaccaacagggcatggaggctaaactctcagctctctcaggcctc
ggtcttaacaactgcagggctgacaaggaacgagtccactttgaaagtttggggcatcat
ctgggaaaactgggagacgatgggaagatcggacagagagtcattgacctgaccaggcca
gaggacctcgacgggagtaaggagctgaatggttctgcagataaaccacaacagtattat
tgttggccaacaggaggcgccagcactaccgaagcccgggtgttcagagaatcgcgagga
cggaaccccaacgagccacacatcaagcgacccatgaacgccttcatggtgtgggccaag
gacgagcgccgcaaaatcctgcaggctttcccggacatgcacaactccaacatcagcaaa
atcctgggctctcgctggaaggccatgtccaaccaggagaagcagccgtactatgaggaa
caggctcgtctgagcaagatccacctggagaagtaccccaactacaagtacaagcctcgg
cccaagcgcacgtgcatcatcgatggcaagaagctgcgcatcggcgagtacaagcagatg
atgcgctcgcggaggcaggaaatgcgccagttcttcactgtggggcagcagccccagact
cagctcccgatcagcagcagcgcgggcgtcgtctaccccggagccatcagcatgacctca
gactgctcgagcaactcggccagccccgagcccaccgtgcccgtcatccagagcaccttc
ggcatgaagatggagcccagcgtgcccagcgtggtgcccagcgaaccggtcaacggcgag
gacgacatggacatgtacgaggacttcgaggacgagcccaaatcggactacagcagcgag
aacgaggcgcaggagcccgtcagcgccaactga
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