Pangasianodon hypophthalmus (striped catfish): 113536817
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Entry
113536817 CDS
T05759
Symbol
rfc5
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03030
DNA replication
phyp03410
Base excision repair
phyp03420
Nucleotide excision repair
phyp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113536817 (rfc5)
03410 Base excision repair
113536817 (rfc5)
03420 Nucleotide excision repair
113536817 (rfc5)
03430 Mismatch repair
113536817 (rfc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113536817 (rfc5)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113536817 (rfc5)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113536817 (rfc5)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
113536817 (rfc5)
DNA Replication Termination Factors
ELG1-RFC complex
113536817 (rfc5)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
113536817 (rfc5)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
113536817 (rfc5)
Check point factors
HRAD17(Rad24)-RFC complex
113536817 (rfc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_11
AAA_22
RuvB_N
AAA_lid_RFC1
AAA_assoc_2
AAA_14
DEAD
ResIII
AAA_24
AAA_16
PhoH
DUF815
TIP49
AAA_7
nSTAND_NTPase5
ATPase_2
AAA_5
AAA_30
AAA_19
TniB
nSTAND3
DNAX_ATPase_lid
AAA_2
Thioredoxin_6
DUF4119
Motif
Other DBs
NCBI-GeneID:
113536817
NCBI-ProteinID:
XP_026786733
LinkDB
All DBs
Position
Unknown
AA seq
334 aa
AA seq
DB search
MASTSKVPLQARNLPWVEKYRPQTLDDLISHQDILSTIQKFIREDRLPHLLFYGPPGTGK
TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQTQMIPRL
EHVIQQESIEITPDGMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSD
IANILDWALNKDFTTAYNQILQLKTLKGLALHDILTELHLLIHRVDFPPAIRMGLLIKLA
DIEYRLASGTSEKIQLSSMVAAFQAVRDIVVSDG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacaagcaaggtacctcttcaggccaggaatttgccatgggttgaaaagtac
agaccgcagacgctggatgatttgatctcacatcaggacattctgagtacaattcagaag
ttcattagagaagaccgactgcctcacctgctgttttacgggcctccgggaacaggaaag
acctccaccattttagcctgtgctaggcagctctacaaggataaagagttcaactccatg
gttctggagctcaacgcttcagacgaccgtggtatagacgtggtaagaggccccatcctc
agcttcgccagcaccaggaccattttcaagaagggttttaagttggtgattctggatgag
gcggatgccatgacccaggacgctcagaacgctttaaggagagtgattgagaagttcaca
gagaacactcggttctgtctgatctgtaactacttgtctaaaatcatccctgcgctgcag
tcacgatgcacacgcttccgttttgggcctctgtcccagactcagatgatccccagactc
gagcatgtcatccagcaggagagcattgaaatcactccagatggcatgaaggctattgtg
accttgtcaacaggagacatgaggcgatcgttaaacattctacagagcactcatatggcc
tatgggaaggtgactgaggagacggtttacacgtgcacaggacatcctctgcgctcagac
atcgccaacatactggactgggccttgaacaaagacttcaccacggcatataaccaaatc
ctacagctgaaaactctgaaaggtttagcgctgcacgacattctgaccgagctgcatctt
ctcatacacagagtggattttcctccagcgattcggatgggcttgctgataaagcttgca
gacatcgagtatcgcctggcttctggaaccagtgagaagattcagctgagttcaatggtg
gctgctttccaggcagttagagatatagtagtcagtgatggctag
DBGET
integrated database retrieval system
