Pangasianodon hypophthalmus (striped catfish): 113536905
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Entry
113536905 CDS
T05759
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113536905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113536905
03036 Chromosome and associated proteins [BR:
phyp03036
]
113536905
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113536905
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
113536905
Chromatin remodeling factors
BAF complex
113536905
PBAF complex
113536905
GBAF(ncBAF) complex
113536905
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
113536905
NCBI-ProteinID:
XP_026786862
LinkDB
All DBs
Position
Unknown
AA seq
1576 aa
AA seq
DB search
MSTPTDPSVGMSHPGPSPGAGLSPGPILGPSPGPGPSPGSVHSMMGPSPGPPNVPHGMQG
QGSGDYPQEGMHPMHKPMEGMHDKGMGDEMHYGQIKGVGMRSLHSGMGPPQSPMDQHSQG
YMSPHPSPMGSVPEHVSSPMSGGGPTPPQMSQAQSGPMMQMDQQGRGHTAFSPVQLQQLR
AQILAYKILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQPVNTGPYNRPPAMSVPHGSPA
SGSCSTPGMQTHTPSTGPKPWTEGQGAEAPSGSQKLPVPAPSGRPSPAPPQAPTAAQAMP
STSLTPQSQSQPQTQQPQQQQGPGQTSLIIQLQQKQNRITPIQKPQGLDPGELLQEREYR
LQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQDVVACMRRDTTLETA
LNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSI
SGKIQKLSKAVATWHTNTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYL
LQQTDEYVANLTTLVYEHKAAQAAKEKKKRKKKKKKEDGDTEALGAIGPDGEPIDESSQM
SELPVKVIQTETGKVLQGTDAPKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEEEDEEEV
VSRAESEEKKMIDPNSDEVSERAAKHIIESAKQDVDDEYSVQAGQTSSQSYYGVAHAVIE
KVEKQSSLLVNGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHK
RLNGPYLIIVPLSTLSNWVYELDKWAPSIVKIAYKGMPSMRRSLVPQLRSGKFNVLITTY
EYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPE
LWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRL
KKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIM
QLKKICNHPYMFQHIEESFAEHLGYPNGIINGPDLYRASGKFELLDRILPKLQATHHRVL
LFCQMTSLMTIMEDYFAYRNFLYLRLDGTTKSEDRAALLKKFNDEGSQYFIFLLSTRAGG
LGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKY
KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQNEEEDEVPDDETLNQMIARNEEEF
ELFMRMDLDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEKEKMFPRGSRH
RRDVDYSDTLTEKQWLRAIEDGNLEEMEEEIRLKKRKRRRYLDKGSRREDGDKAKKRRGR
PPAEKLSPNPPKLTKQMSAIVETVINYRDGSGRQLSEVFVQLPSRKELPEYYELIRKPVD
FKKIKERVRNHKYRSLGDLEKDVMLLCHNAQTYNLEGSQIFEDSIVLQSVFRSARQKIAK
EESEDDSNDEEDDEESETETKSVKVKIKLSKREERSQERGKKRPIRVKAKPVVSDDDSDE
EQEENEQSEGSPTEDE
NT seq
4731 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccaactgatccgtcagtcggaatgtcccaccctggtccttcccctggcgct
ggcctttcccctgggcccattttaggccccagtcccggaccaggcccctctccaggctct
gtccacagcatgatgggcccgagcccaggacctcccaacgtacctcatggcatgcagggc
caggggtcaggagactatcctcaggagggcatgcatcccatgcacaaacccatggaagga
atgcatgacaagggcatgggagacgaaatgcactatgggcagatcaaaggtgttggcatg
agatccctccacagtggcatgggcccaccacagagtccaatggatcagcacagccaagga
tacatgtcacctcacccttccccaatgggctctgtacctgagcacgtatcaagccccatg
tctggagggggtcctaccccacctcagatgtcccaggctcagtcaggccccatgatgcag
atggaccagcagggccgtggccacacggccttcagccctgttcaactgcagcagctccgt
gctcagatacttgcttacaagatcctgggccgtggacagcctctgcctgagaacctgcaa
ctggctgtacagggcaagaggagccttcccacaatgcagcagcagcagcagcagcagcct
gtcaacactggaccttacaacaggcctccagctatgtctgtgccccatggaagccctgcg
tctggctcatgttccactccaggcatgcagacacacactccaagcactgggccaaaacca
tggacagaaggtcaaggtgctgaggcccctagcggctcccagaagctccctgtgccagcc
cctagtggcaggccctctcccgctcctcctcaggctcctacagctgctcaggccatgccc
agcacatctctcacaccacagtcccaatcacaaccccaaacccagcagccccagcagcaa
cagggccctgggcagacctcactcattatccagctccagcagaagcagaaccgcatcaca
cccatccagaaaccacagggcctggacccaggggagcttctgcaggaacgagagtacagg
ttgcaggccaggattgctcatagaattcaagagctggagaatctccctggttctttgcct
cctgacctgagaactaaagcaacagtcgagctgaaggccttaagacttctcaattttcaa
cggcagctgcggcaggacgttgtggcctgcatgcgcagagataccactttggagacagcg
ctgaattccaaggcctacaagcgcagtaagaggcaaacactgagagaggcgcgtatgaca
gagaagctggaaaaacagcagaaaattgaacaggagagaaagcggcgtcagaaacatcag
gaataccttaacagcatcctccagcatgctaaagacttcaaggagtatcaccgctcgatc
tctggaaagatccagaagttgtccaaggctgtggccacatggcataccaacacagagaga
gagcagaagaaggagacagaaagaatcgagaaagagaggatgagaaggctaatggcagag
gatgaagagggctacaggaagctgattgaccagaagaaggacaaacgtctagcctacctg
ctccagcagactgatgagtatgtggccaacctcactaccttggtctatgaacacaaggct
gcccaggctgccaaggaaaaaaagaagagaaagaagaagaagaagaaggaagatggggat
actgaggcacttggagcaattggacctgatggggagcccattgatgagagcagtcagatg
agtgaactcccagtcaaagtcattcagactgagacagggaaggtactacagggcacagat
gctcccaagtctagccaactggaggcctggcttgagatgaatcctggctatgaagtggcc
ccgaggtcagacagtgaagagagtggttcagagtttgaagaggaggatgaagaggaagtg
gtctcccgggcagaatcggaagaaaagaaaatgattgatcccaatagtgatgaggtgtct
gaaagagcagcaaagcacatcatagagtctgccaagcaagatgtggatgatgagtacagt
gtccaggcaggacagaccagttcacagtcttactacggagtagcccatgctgttattgag
aaggtggagaagcagtcatccttactggtcaatggcacactcaagcaataccagatccag
gggctggagtggatggtgtccctgtacaacaataacctaaatggcattctggcggatgag
atggggctggggaagaccatccaaaccattgccctcatcacatacctaatggaacacaag
agacttaatggtccttatctgatcatcgtgccgttgtcgactttgtccaactgggtttat
gaacttgacaagtgggccccatccattgtgaaaattgcttacaagggcatgccatccatg
cggaggtcactggtgcctcaacttcgtagcgggaagttcaacgtcctcataaccacctat
gagtacatcatcaaggacaaacacattctcgctaaaatccgctggaagtacatgattgtg
gacgagggccatcgtatgaagaaccaccactgcaagcttacacaggtgttgaacacgcat
tacgtcgccccacgcaggcttttgctgacaggaacccctctgcagaacaaactgcctgag
ctttgggctctgctcaactttctactgcccacaatctttaaaagttgcagcacctttgag
cagtggttcaatgctccattcgccatgaccggggaaagggtggatctgaatgaagaggag
accatcctgatcatccgccgtcttcacaaagtgctgcgccctttcttgcttcgtagacta
aagaaggaagtggagtctcagctgcctgaaaaggtggagtatgtgatcaaatgtgacatg
tcagccattcaaaaagttctctacaggcacatgcaaggcaaaggcatcttgctcacagat
ggctcagagaaagacaagaagggtaaaggaggggcaaagactctgatgaacaccatcatg
cagctgaagaagatctgcaaccacccttatatgttccagcacattgaggaatcttttgct
gagcacttaggctacccaaatggcatcatcaatggtcctgatctgtaccgtgcttcagga
aaatttgagctgctggaccgcatcctgcctaagctgcaggccacccatcacagagtgttg
ctcttctgtcagatgacttccctaatgaccatcatggaggactacttcgcctaccgcaac
ttcctctacctacggctagatggaacaaccaagtctgaagaccgtgctgcactgctgaaa
aagtttaatgatgagggctcacagtatttcatcttcctgctgagcaccagggcagggggt
ctgggcctcaacctgcaggctgctgacactgttgtaatcttcgacagtgactggaacccc
caccaggatctgcaggctcaggaccgtgctcaccgaatcggacagcagaatgaggtgcgt
gtgctgcgtctctgcaccgtcaacagcgtagaagagaagatcctcgctgctgccaaatat
aaactcaacgttgatcagaaggtcatccaggccggcatgttcgaccagaaatcctctagt
cacgaacgcagggctttcctacaggccatcctggaacatgaggagcagaacgaggaggaa
gatgaagttccagatgatgaaacgctaaatcaaatgattgcccgcaatgaggaggaattt
gagcttttcatgcgcatggacctggatcggcgtcgcgaagatgcacgtaaccctaaacgt
aagcctcgtctgatggaagaggacgagctaccatcctggatcatcaaagacgacgctgaa
gtggagcggctcacctgtgaggaagagaaagagaagatgttcccccgtggatcacgccac
cgcagggatgtggattacagcgacacgctgactgaaaaacagtggctgagagccattgaa
gatggtaacctggaggagatggaagaggagatccgtttgaagaagcgcaagcgcaggaga
tacttggacaaaggcagccgacgcgaggatggggacaaggctaaaaagaggagggggcga
cctccggctgaaaagctctcccccaaccctcccaaactcaccaaacagatgagcgccatc
gttgagacagtcatcaactacagagacggatcaggccgtcagctcagtgaggtgtttgta
caactgccttccaggaaagagctcccagagtactacgaactgataaggaagccagtagac
ttcaagaagatcaaggagagagtgcgcaaccataagtacaggagcttgggcgatttggaa
aaggacgtaatgctcctctgtcacaatgctcaaacctacaatctagaaggctctcagatc
tttgaggactccatagtgctgcagtccgtgttcaggagcgccaggcagaagattgccaaa
gaggagagtgaggacgacagcaatgatgaggaggatgatgaggagtcagagactgagact
aagtcagtgaaagtgaagatcaagctgagcaagcgggaggagcgcagccaagaacggggc
aagaagcggccgatccgggtcaaggccaagcctgtggtcagtgatgatgacagtgatgag
gaacaggaggagaatgagcagtctgagggcagccccacagaagatgagtga
DBGET
integrated database retrieval system
