Pangasianodon hypophthalmus (striped catfish): 113537015
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Entry
113537015 CDS
T05759
Name
(RefSeq) thrombospondin-4-B-like isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04145
Phagosome
phyp04510
Focal adhesion
phyp04512
ECM-receptor interaction
phyp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113537015
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
113537015
09144 Cellular community - eukaryotes
04510 Focal adhesion
113537015
09142 Cell motility
04820 Cytoskeleton in muscle cells
113537015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113537015
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
phyp04147
]
113537015
00536 Glycosaminoglycan binding proteins [BR:
phyp00536
]
113537015
Membrane trafficking [BR:
phyp04131
]
Endocytosis
Phagocytosis
Opsonins
113537015
Exosome [BR:
phyp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
113537015
Exosomal proteins of colorectal cancer cells
113537015
Exosomal proteins of bladder cancer cells
113537015
Glycosaminoglycan binding proteins [BR:
phyp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113537015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
cEGF
EGF_MSP1_1
EGF
DUF7630
AKNA
HIN
Motif
Other DBs
NCBI-GeneID:
113537015
NCBI-ProteinID:
XP_026787088
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MVVWARVLFSVHVVMQLTYVVTSQGIVYDLLVSPDCLPDLLQGGLKNKNVNDVFILTTFQ
VQNKAPVHVFRIYNPTDNTDHLDFTVHGKHNKVSLRYLKSNGKVGTATFVKVPLADGRPH
NVMLHFSGLTHGTPRMVLYVDCRLVEIVEELPAAFKTLPSGPNRVALKTMPTTSEGSVSD
LKLVLGESIENVVELQDCSLQQGESLQLLGLSSKLEPGPMFELVQMIQELKERMDQQIQE
TANLKRILMECVPCDGQNTRTDSQTKCAPGVCFQLSMCIETEEGFKCEPCPEGYTGDGVH
CEDVDECQFNPCFPGVRCMNTVPGFRCERCPRGYSGPELQGAGITYIQSHKQVCNDVDEC
QSVDNGGCTPNSYCHNTMGSFYCGECKPGFTGDQTSGCKQTSDSGPGPVDPAPLTNRLCG
NGQPNPCDLNAECIVERDGSVSCVCNIGWAGNGYVCGKDTDIDAYPDRKLPCQDTYCKKV
TYICHSSFHTTSQVFICPQRLFFIFSYFCVNDLSHVCCFQDNCMFVPNSGQEDADGDGKG
DACDEDADSDGIFNEKDNCWLTPNIDQKNSDEDQHGDACDNCLKINNPDQRDTDQDGLGD
DCDDDMDGDGVKNILDNCQRVPNRDQVDSDNDGVGDVCDSCPDVPNPNQSDVDDDLVGDT
CDTNTDSDGDGHQNTKDNCPTVINSSQLDTDKDGLGDECDDDDDNDGIPDNKDNCRLVPN
ADQADKDNDNVGDACTGDYDQDRVIDKIDTCPENAEITLTDFRAYQTVVLDPEGEAQIDP
NWVVLNQGMEIVQTMNSDPGLAVGYTAFSGVDFEGTFHVNTVTDDDYAGFIFGYQDSSSF
YVVMWKQTEQTYWQAVPFRAVAEPGIQLKAVKSKTGPGEFLRNSLWHTGNTKDQVQLLWK
DPRNVGWKDKVSYRWNLQHRPQVGYIRVRFYEGASLVADSGVVIDMSMRGGRLGVFCFSQ
ENIIWSNLKYRCNDTIPENYQEHVAQELSRKEDAQDNTTQ
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggttgtatgggcaagagtattgttcagtgtacatgtggttatgcagctaacctatgtg
gtgacttcccaaggaattgtctatgatctcctggtgtcacctgattgtttgcctgatctc
ctgcaaggaggactgaagaataagaacgtgaatgatgtttttatcctgacaacctttcag
gtccagaataaagctccagtgcatgttttccgcatttacaaccctacagacaacaccgat
catttagatttcactgtacatgggaaacacaacaaagtctctctgaggtatctgaaaagc
aatggaaaggtaggtacagccaccttcgtcaaagtgccgttggctgatggccggccacac
aacgtcatgctgcacttcagcgggctgactcatggcactcctcgcatggttctgtatgtg
gactgtagactggtggagatagtggaggaactgccagctgcctttaagacactaccttct
ggccctaatcgagtggcactaaaaaccatgcccactacatcagagggtagtgtgtcagac
cttaagctagttctgggtgaatcaatagagaatgttgtggagcttcaagactgttctctt
cagcagggtgaatcactgcaattactaggcctctcatcaaagctggagccaggccccatg
tttgaacttgtacagatgatccaagaactgaaagagagaatggaccagcagatccaggag
actgcaaatttaaagagaatacttatggagtgtgttccatgtgatggacaaaacacacgg
acagactcccaaaccaagtgtgctccaggagtatgcttccagctgagcatgtgtattgag
acagaggaaggcttcaagtgtgaaccgtgtcctgaaggctatactggagatggagtccac
tgtgaggatgtggatgagtgtcagttcaacccgtgtttccctggtgtgcgatgcatgaac
acagtcccagggttccggtgtgagagatgccccagagggtacagtgggccggagttgcag
ggtgcgggcatcacctacatccagtcacataagcaggtctgtaatgatgtagacgaatgc
caaagtgtggacaatggcggctgcactcctaattcctattgccacaatacaatgggttca
ttctactgtggagagtgtaagcctggtttcactggagaccaaacaagtggctgcaagcag
acctctgattctggacctggtcctgttgatcctgctcctctcactaacaggctgtgtggg
aacggtcagcccaacccctgcgacctcaacgctgagtgtatcgtggagagagatggaagc
gtcagctgtgtgtgcaacatcggctgggctggtaatggctatgtgtgtgggaaggatacc
gacattgatgcttaccctgacagaaaacttccatgccaggatacatactgcaaaaaggtg
acctatatttgccattcttcatttcatactacttcccaagtgtttatatgtccacaaagg
cttttcttcatcttcagttacttctgcgtgaatgatttatcacatgtatgttgtttccag
gacaactgcatgtttgtacctaattcaggccaggaagacgcagatggcgatggaaaaggt
gacgcctgcgatgaagatgcagacagcgatggtatcttcaatgagaaggacaactgctgg
ttgactccaaacatagaccagaagaacagtgatgaagatcaacatggtgacgcatgtgac
aactgcctaaaaataaataatccagaccagcgggacacggaccaggatggactgggagat
gattgtgatgatgacatggatggcgatggcgtgaaaaatattttggataactgccagaga
gttcccaaccgcgaccaggtggacagtgataatgatggtgtgggagatgtttgtgacagc
tgccctgatgttcccaaccccaaccagtcagatgtcgatgatgaccttgtaggagacact
tgtgataccaacactgacagtgatggggatggacaccagaacaccaaagataattgccct
acagtcatcaacagctctcagctagacacagacaaggatgggcttggggacgaatgtgat
gatgatgatgataacgacggcatcccagataataaagacaactgcagattggtgcccaat
gcagaccaagcagataaagacaatgacaatgtgggcgatgcctgtactggagactatgac
caagatcgggtgattgacaagattgacacgtgtcctgagaatgcagagatcacactgacg
gacttcagagcatatcagactgtggtgctggacccagagggcgaagctcagattgacccc
aactgggtcgtcctcaatcagggcatggagattgttcagacgatgaacagcgatccagga
ctcgcagtaggttacacagccttcagtggcgtggatttcgagggaaccttccacgtgaac
acggtgactgacgatgactatgctggattcatctttggctaccaggactcttctagtttc
tacgtggttatgtggaagcagacagagcagacatactggcaggctgtgcctttcagggcc
gtggctgaacctggcatccagctcaaggctgtgaaatctaagacggggcctggcgagttt
ctgaggaattctctatggcacacggggaacaccaaggatcaagtgcagctgctgtggaaa
gaccctcgcaacgtaggctggaaggacaaggtctcataccgctggaacctacagcatcgg
cctcaagtcggatacatcagggtccgtttttatgaaggcgccagcctggtggcagactcc
ggtgtggtcatagacatgagcatgaggggtggccgtcttggtgtgttctgcttctcacaa
gaaaacatcatctggtccaatctgaaatatcgttgcaatgacacaatccctgaaaactac
caggagcacgttgcacaggaactctccaggaaagaggatgcacaggataataccacacag
taa
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