Pangasianodon hypophthalmus (striped catfish): 113537200
Help
Entry
113537200 CDS
T05759
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03030
DNA replication
phyp03410
Base excision repair
phyp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113537200 (pole)
03410 Base excision repair
113537200 (pole)
03420 Nucleotide excision repair
113537200 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
phyp03032
]
113537200 (pole)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113537200 (pole)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
113537200 (pole)
DNA replication proteins [BR:
phyp03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
113537200 (pole)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
113537200 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
Pox_Ag35
Motif
Other DBs
NCBI-GeneID:
113537200
NCBI-ProteinID:
XP_026787396
LinkDB
All DBs
Position
Unknown
AA seq
2287 aa
AA seq
DB search
MVLQNSGRYKADRGGGADQDKQQDDVSSLSAVKRLERSQFTDEMDARYGFERMKEPGEKT
GWLINMHPTEILDDDKRMISAVDYYFIQEDGSRFKVALPYKPYFYIATKKNCEREVISFL
SKKFQGKIAKLETIPKEDLDLHNHLVGLKRNYIKLSFNTVDDLVKVKREITPAVRKNRER
EKSNDAYTSMLSSALVGGSVTTADEDGTSKKMADQLDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGFLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAALIQRWFEHIHETKPNIF
VTYNGDFFDWPFVEARAAHHNLNMYQEIGFQKDSQGEYKASQSIHMDCLRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAFHVNIIFPNKQEQVFNKLTDDGHVLDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTLRHAVEEEEKIPLEQVTNFNEV
CDDIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GATCQRRMAWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGKPRAFHELNREEQARHE
KKRLGDYCRKAYKKVHLTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQESGDAAEVKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCHTG
ANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSSNEKKPKVTISYPGAMLNI
MVKEGFTNDQYQELVDPASLTYETRSENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYV
ISRKPEGSPVTERAIPLAIFQAEASVKKHFLRKWLKMPSLHDMDIRSILDWGYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISEMFTSEGKRQVANQT
EPGKTPDMEDFGAPQRPLQPAILISTKRKRASQGEDSQTQESQELELTQSWREILGPPPP
MGTTQEERLVWLRYHKKKWELQIRQRKERRKRRRMLDGEAQPTGGGVIRDGPTTGLGSFL
RRTARSILDMPWQIVQIAETSQPGLYKLWAVIGTDLHCMKLNIPRVFYVNQRVPKQEEGA
TYKKVNRILPRSNVVYYLYQYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALV
QLGCVCMVNKQVVRALAGREADTFELEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKAL
FGLFIPSQRKASVFVLDTVRSNQMPNLSTLYGAERTALLEKTSEELLPPEKHLFEVRAEN
DVKAIYRAVQRILLSYKEERRGPTLIAVQSNWELRRLVAGMTVLEEFPVVPVHVTDDISY
SVLDWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPEDISIFGSDLFLARHLRK
HNHLLWLSPTARPDLGGKEADDSRLVMESDERGSMEINAPGCFSTVCVELDIQSLAVNTI
LQSQHVNDMEGGASMGVSFDVIQHASLEDMMSGNQGATAVASYDETALCSNTFRILKSMV
VGWVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRL
GSSVVYGNFNRIILSTKKRRIDDAIAYVEYITNSIHSREIFHSLSITFSRCWEFLLWMDP
ANYGGVKGKVPSSIMYGETGTDKKKKGKQEGEDEGSEDEEEEDDEPEEEQDREEDEVEDL
IESSWNIMQYLPQAASCQKYFLMIISAYIAAVYHSMREELRRNAPGATPIKRRGGSQASQ
QPAGDISALPGMITFSQEYVSSELTQNIFTITQKIQKKVCGTRSVTQPSEMFPVLPGSHL
PLNNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVNVGEFSEEAQFRDPCNSYVLPE
VICHQCNYCRDLDLCKDPSIAQDGSVLPQWFCSNCQAQYDTDSIEMALVEALQKKLMSYT
LQDLECAKCRGVKEANMPLYCSCAGDFNLTFSTKSFTEQVDVFRSIAAHCNMNFLLETID
WILRMNS
NT seq
6864 nt
NT seq
+upstream
nt +downstream
nt
atggttttacagaacagtgggagatataaagcagaccggggtggaggagctgatcaggac
aaacagcaggatgacgtgtccagcttgtccgccgtcaagcggcttgagcgcagtcagttc
acagatgaaatggacgcccgctacggcttcgagcgcatgaaggagccgggagaaaaaacc
ggctggttgatcaacatgcatccgacggagattctggatgatgataagcggatgatcagc
gcagtggattattatttcattcaggaggatggcagcaggtttaaggtcgcactgccatat
aagccgtacttctacatagcgactaaaaagaactgtgagagagaagtcatctccttttta
tcaaaaaagttccaaggaaagatcgcaaagttagagaccatccccaaggaggatctcgac
ctgcataaccacctggtgggactgaagaggaactacattaaactgtcctttaacacagtg
gacgatctcgtcaaggtgaagcgggagatcacgcctgctgtgaggaagaacagagagagg
gagaaatccaacgatgcctacactagcatgctgtccagcgcacttgtaggtggaagcgtg
acgacggccgacgaagatggcacgtctaagaaaatggccgaccagctggacaacattgtg
gatatgagggagtacgacgtgccttaccatgttagactgtccatcgacctcaagatccat
gtggctcactggtataacgtgcggtacagaggaagtgcttatcctccggagatcgtgcgt
cgggatgaccttgtggaaagaccagatcctgtcgtcttggcgtttgatatcgagaccacc
aagctccctctgaagttccccgacgcagaaactgaccagatcatgatgatctcatacatg
attgatgggcagggtttcctcattaccaacagagagatcgtctccgaggacatcgaggat
tttgagttcacgcctaagccggagtacgagggccctttcactgtgtttaacgaacctgac
gaggctgctcttattcagcgctggttcgagcacatccatgagaccaaacccaacattttt
gtcacctataacggagacttcttcgactggccgtttgtagaggcgcgcgcagctcaccac
aacctcaacatgtatcaggagatcggttttcagaaggacagccagggcgagtacaaggcc
agccagtctattcacatggactgcctcaggtgggtaaagagagacagttacctgcctgtc
ggaagccacaacctgaaagcagcggcgaaggccaagctgggttacgaccctgtggagttg
gaccctgaagagatgtgccgcatggccactgaggagccgcagactttggccacctactca
gtgtcagatgctgtggctacctactatctctacatgaaatatgttcatcccttcatcttc
gccctgtgcaccatcattcccatggagcctgacgaggtgttgcgtaaaggttcaggtact
ctgtgcgaggcgttgttgatggtgcaggctttccacgtcaacatcattttcccgaacaag
caggagcaggtgttcaataagctcacagacgacggccatgtcctggactcggagacctac
gtgggcggccatgtcgaggctctggagtctggagtattccgcagtgacatcccgtgccgc
ttcaaaatgaatccggcagcattcgacttcctgcttcagagggtggagcggactctgcgg
catgctgttgaagaagaggagaagatcccgctggagcaagtcacaaactttaatgaggtt
tgtgatgacatcaagaagaagctgatctctttgaaagaagtgcctaacaggatcgagtgt
cctcttatttaccatctcgacgtaggggccatgtaccccaacatcatccttaccaacaga
ttgcagccgtctgccatggtcgatgaggcgacctgtgctgcatgcgattttaataaacct
ggagctacctgccagaggaggatggcctggcagtggagaggagagatcatgccagccagt
cgtagtgagttccaccgtattcagcagcagttggagtctgagaagttccctcctctgttt
cctaacggaaaaccacgtgccttccacgagcttaacagagaggaacaggctcggcacgaa
aagaaacgtctgggagactattgtcggaaggcctataagaaggtgcacttgacgaggctg
gaagagagagtcactacaatatgtcagagagagaattccttctacgtggacacggttcga
gctttccgagatcgccgctatgagtttaaaggactgcataaggtgtggaagaagaagctg
tctgcggctcaggagagcggcgatgcagcagaagtgaagcgctgtaaaaatatggagatt
ctttatgattctctgcagcttgcccataaatgcatcctcaattccttctacggatacgtc
atgagaaaaggagcgagatggtattccatggaaatggccggcattgtgtgtcacacagga
gccaacatcatcacacaggccagagagctaatcgaacaaattgggaggcctttagagctg
gacactgatggtatctggtgtgtcctgcctaactccttccctgagaactttgtcatcaaa
tccagcaacgagaagaagcccaaagtgaccataagttaccccggggccatgctgaacatc
atggtcaaggaaggctttaccaacgatcagtaccaggagctggtggacccggcctcgctc
acgtacgagacgaggtcagagaacagcatcttctttgaggtggatggaccgtacctggcc
atgatcctgcctgcgtctaaagaggagggcaagaagctgaagaagagatatgctgtgttt
aacgaggacggctctctggccgagctgaagggtttcgaggtaaagaggagaggagagctc
cagctcattaagatcttccagtcatctgtgttcgaggctttcctcaaaggcaccactctg
gaggaagtctacgcctcggtcgccaaagtggccgactactggctggatgtgctctacagc
aaggcagctaacatgccagacgcagagctcttcgagttgatttcggaaaatcgctccatg
tcccggaaactggaagactacggcgagcagaagtccacttccatcagtacagccaaacgt
ctggccgagtttctcggagatcagatggtgaaggatgcaggtctgagctgtcgctacgtc
atctctcgcaaacctgaaggctctcctgttactgagagggcgattcctctggccatattc
caggctgaagctagcgttaagaagcacttcctgcgcaaatggctgaagatgcccagcctc
catgacatggacatcagatcaatcctggactggggttactacattgagagattgggcagt
gccatacagaagatcatcaccattccagcagcactacagcaggtgaaaaacccagtgccg
cgagtgcgccatccagactggctccataagaagcttctggaaaagaacgacatctacaaa
cagaagaaaatcagcgagatgttcacaagtgaaggaaagagacaggtggccaatcagaca
gagccaggcaagactcctgatatggaggatttcggggctccacagcgccccctacagcct
gccatcctcattagtactaagaggaagcgagcgtctcagggtgaggacagccagactcag
gagtctcaggagctggagctcacacagtcctggagagagatactgggtcctccgccacct
atgggtacaacacaggaggagaggctggtgtggctgcgttaccataagaagaagtgggag
ctgcagatccggcagaggaaagagcgcaggaagagacgacgcatgcttgatggagaggct
cagccaaccggaggcggcgtgatcagggacggaccaaccacaggactagggagcttcctc
cgcaggacagcacggagcattctggacatgccctggcaaatagtacagattgcagaaacc
agtcagccgggcctgtataagctgtgggcggtgatcggcactgacctgcactgcatgaaa
cttaatatcccacgagtgttttatgtcaatcaaagagtgcccaagcaggaagagggagcc
acgtacaaaaaggtgaaccggattttgccgcgctccaacgtggtgtattacctgtaccag
tactctgtgcctgaagacatgtatcaggagcacatcaatgagatcaatgcagacctttct
gccccagacatagagggcgtctacgaaacacaggtgccgctgctattccgggcgctggtg
cagctcggctgtgtgtgtatggtcaataagcaggtggtgagggcgctggctggccgagag
gctgacaccttcgagctggagcacctggagatgagatcgctcgctcagttcagctacctg
gagccaggcagcgtgagacacatctacctgtaccatcacagtcagggccacaaggctctt
ttcggcctcttcatcccctctcagcgcaaagccagcgtcttcgtcctcgatacggttcgg
agtaaccagatgccgaacctgagtacgctgtatggagcggagcgcactgcgctgttagag
aagacctcagaggagctgctgcctccagagaagcacctgtttgaagtgcgtgctgagaac
gacgtgaaggccatttaccgcgcagtgcagcgcattctgctcagctataaggaggagcgt
cgtggtcccactctcatcgctgtgcagtctaactgggagctgcggcgtctggtggccggc
atgaccgtgctggaggagttccccgtggttcccgtgcacgtgacagacgacatcagctac
agcgtgctggactggcagcggcacggcgcacgccgcatgatcaaacactacttaaacctg
gacagctgtctttcacaggccttcgacatggccaggtattaccacttgcctgtagggaac
ctgcctgaggacatctctatttttggctcggacctctttctggcacgtcacttgcggaag
cacaaccacctgctgtggctttcacccacagccagacccgacctcgggggcaaggaggcc
gacgacagccgcctggtgatggagagcgatgagcggggctccatggagatcaacgctccg
ggatgcttctccacagtgtgtgtggagttggacattcagagcttggcggtgaacaccatc
ctccagtcgcagcacgtaaatgacatggagggcggggccagcatgggcgtgagttttgat
gtcattcagcacgcatcactggaagacatgatgtcaggaaaccagggagcgaccgctgtg
gctagttatgatgagactgcactctgctccaacacattcaggatcctgaagagcatggtg
gttggctgggtgcgggagatcacacagtaccataacgtgtacgcagataatcaggtgatg
cacttctaccgctggctgcgctcccccagctcgctcctgtacgacccggcgctgcaccgc
acgctgctcaacatgatgaagaagatcttcctccagctggttgctgagtttaagcggctc
ggttcctctgtggtctatgggaacttcaaccgcatcatcctcagtaccaagaaacggcgc
attgatgacgccatcgcctacgtggagtacatcaccaacagcatccattcacgggagatc
ttccactctctgtccatcaccttctctcgatgctgggagttcctgctgtggatggatcca
gctaactacggaggagtgaaaggaaaagtgccctccagcatcatgtacggagagactggc
acagacaagaaaaagaaaggaaagcaggaaggagaggatgagggcagtgaggacgaggag
gaggaggatgatgaaccagaggaagagcaagatagagaggaggatgaggtggaggacctg
attgagagcagctggaacatcatgcagtaccttcctcaggctgcttcctgtcagaagtat
ttccttatgatcatctcagcgtacattgccgctgtgtatcacagcatgagggaggagctc
agacgaaatgctcctggagccacgcccataaagaggcggggcggaagccaagcgtcccaa
cagcctgccggtgacatcagtgcacttcctggcatgatcacgttctctcaggagtacgtg
tcgagcgagctcacgcagaacatcttcaccatcacacagaagatccagaaaaaggtgtgt
gggacacgcagtgtgactcaaccgtctgaaatgttccccgtgctgccaggatcacatctg
cccctcaacaaccccgctctggagttcatcaaatacgtctgtcaggttctctcgctggac
gctaacatagtgaaccaggtgaataagctgaagcgggatctcctgcgcttggtgaacgtt
ggggagttctccgaggaggctcagttccgtgacccctgcaactcctacgtcctgccagag
gtcatctgccaccagtgcaactattgccgtgaccttgacctctgcaaggacccttccata
gcccaggacggctcagtcttgccgcagtggttctgctccaactgccaggcgcagtacgac
accgactccatcgaaatggctctagtggaggctctgcagaaaaagctgatgagttacact
ctgcaggacctggagtgtgctaaatgcagaggggtgaaagaagccaacatgcctctgtac
tgcagctgcgcaggagacttcaatctcaccttcagcacaaagagcttcacggagcaggtc
gatgtgttcagaagcatcgctgcccattgcaacatgaacttcctgctggagaccatcgac
tggatcctgaggatgaacagttag
DBGET
integrated database retrieval system
