Pangasianodon hypophthalmus (striped catfish): 113537376
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Entry
113537376 CDS
T05759
Symbol
col17a1
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
113537376 (col17a1)
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GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113537376
NCBI-ProteinID:
XP_026787623
LinkDB
All DBs
Position
Unknown
AA seq
1515 aa
AA seq
DB search
MDNLITTKIVNAEGGSGVSGKVTESVTTTTRLTSLPPKGSSSSVSTQRVLTSTSSSSSGS
GSGSGGTVLVERRIITQSSGGGGGGGGGSSSNVISLGGSSSSAVQVVTGGVSSGSSVTSS
SLGTSSSGAAGGLGASGKSSSIITVGVSSGGGGGSASAFESRSSSQLVSSSSGDLGSLSV
GSMNLSGGGAHSSAMFSGGGASSTVISVGGGSTKYTSSTTSATKSASYSPVTQRKSSLTL
RTAGYEGSSSGNSSPEYTRKEYAAAASAATRGRTQTRESEIRARLQSASPSTRWTELDDV
KKLLKGSRSSSSSPPRSPTNTLPIPKKASVDTRVESHSGYDSSILESAYNGYGYHTNPNN
LSPNSTLQHNMGLQNNLTLNSTAMGSGLSAGNAVYGMQNNLASGGGVAVTANGLSIAPVY
GVRKNIVSTTAPTTAAAAPSSPVTTDDVFVKDYKFMLLEKDNVPVKKESERLIMSKDTGK
TFTSTGGLSATFSDDSLKREKKMISGTTETVVSGVKVAATKDKATYAEIGKDESGGGGMG
FCSCCTWWKWLLGLLLGLLLLLGLLAGLIALSEEVKSLKARVERLEGGGSTIGSAHTSRL
SAPSSVNILDPMDSVQYERTPITRSENTIQLGSVQTQPDPATLHRTIKQLVHSELQSETV
RATLASSLKGERGEPGAKGDQGAPGIKGDAGFPGVPGPPGPPGHPGQEGARGPKGSAGEP
GHDGPPGQRGREGPTGPRGEPGPPGVGEKGEKGVSGEPGPSGPAGPPGPMGLRGEMGAPG
TVGLPGAPGPQGFRGDAGDPGPKGERGPAGPPGAKGDQGEKGPRGVTGEPGQPGPIGPPG
EKGPKGSAGAPGPDGAKGNRGDQGPTGLPGPRGPAGPPGDAGVPGTPGLQGPPGLPGTPG
QPGAKGEPGEPGRVITTGSASNTVAIPGPPGPPGPAGPAGPPGLSGPIGPAGLPGPAGPK
GGKGDKGDDGEPGISAKSVERVKFEPVAGLPGPPGPPGPPGEPGKPGEGKTGLPGPPGPP
GEPGIGLPGPPGDKGEPGSFVPTSETFFAGPPGPPGPPGPQGEPGHPGLPGEPGVGFPGP
EGPSGPPGPEGLPGPQGPPGPEGPPGPKGDAGVPGAPGIPGYSYGGGRSSPGPPGPPGPP
GPPGPPGDASGSPDISQQLSDLLRNGGIREYFTGPPGLPGPPGSVSDDDLANRVISYIQR
EEVRQYLVGPPGPPGPPGIPGLNPQEVAGRVLNLMNEQGMLTQSGPPGPPGPPGLPGTPY
NDLPILLQNSEYRRLTGLPGPPGPPGSPGIPGPHGPPGLVAFTGTFGLEDIQKYLENAGF
RGPPGPPGPPGPQGPPGITGGLVSYAENAHQEPIRAELQEYLKSGRVFREEPSHSFAESK
HLPVETLDYPSIAEQVVNYIKSHGLLLWDLKDIQGPPGPPGPPGHPGISHSYSTYGNMTE
ILKIIRDHGMVGPPGRPGQKGEIGYPGPRGPRGPRGEQGIPGLPGLPGNDGLRGQKGEKG
EAAYINHRRKRSTGV
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atggacaatttaatcacaaccaagattgtgaatgcagagggaggatcaggcgtttcaggg
aaagttacagagagtgtgaccaccacaaccagactgacatcccttcctccaaagggcagc
agtagctcagtgagcactcagcgggtgctgacatctacctctagctctagttctggttct
ggttctggttctggaggaacagtgctggtggagaggaggatcatcacccagagcagcgga
ggaggaggaggaggtggaggagggagcagcagtaatgtcatatccttaggtggctcaagt
agcagtgcggtgcaagttgtgactggtggcgtgagcagtggctcatctgtgacttcatct
tctctgggaacatcttcaagtggagctgctggaggtttgggagcttctggcaaatcctcc
tccatcattacagttggagtttcttcaggaggaggcgggggttctgcaagcgctttcgag
tcccgctcatcttctcagcttgtgtccagctcttctggggacttaggaagcctttcagtt
ggttctatgaatctgtcagggggtggggctcactcatcagccatgttttctggaggaggg
gcttcgtcgactgttatatcagtgggaggtggctctaccaaatacacctcttctacgaca
agcgccacgaagagtgctagctactcaccagtcacacagaggaaaagcagcctgaccctg
cgtactgcaggatatgaaggaagctccagtggcaactcctcccctgaatatactaggaaa
gagtatgcagcagcagcaagtgcagccaccagaggacgcacccagacaagagagagtgag
atcagagccagactgcagagtgcctctccatccactagatggactgagctggatgatgtg
aagaaacttcttaaaggaagtcgctccagtagcagcagtcctcctcgctctcccaccaat
acactgcccatacctaaaaaagcaagcgtggacacacgcgtggagagccactcaggatat
gacagctctatcctggagtctgcgtataatggatatggctatcacaccaaccccaacaac
ctcagccccaactccactctacaacacaacatgggcctgcagaacaacctgaccttgaac
tccacagccatgggcagtggcctttctgctggaaatgcagtgtatgggatgcagaataac
ttggcaagcggtgggggagtggcagtcactgcaaatgggcttagtattgctccagtatat
ggagtgagaaagaacattgtgagcactacagctcccacaactgctgcagccgcccccagc
agccctgtcaccaccgatgatgtgtttgttaaggattacaagttcatgctgctggagaaa
gacaacgttccagtgaagaaagaaagcgagaggctgattatgtcgaaagacacgggcaaa
acattcacttccaccggtggactatcagccacattttcagatgactcgctgaaaagagag
aaaaagatgatctctggaaccacagaaacagtagtcagtggtgtcaaagttgctgcaaca
aaggataaagccacatacgcagagattggtaaagatgaatctggaggaggtgggatggga
ttctgctcctgctgtacatggtggaaatggctgcttggattgctgttgggactgctctta
ctgctgggtcttctcgctggactcatcgctctctctgaggaagtaaagagcctaaaggct
cgagtggaacgtctggaaggcggcgggagcaccataggctccgctcacactagccgcctg
tcagcaccatcctctgtgaacattttagatccaatggattctgtacaatatgaacgcacc
cctataacacgatcagaaaacactatacaactaggatctgtccaaacgcagcctgaccca
gccacactgcacaggaccataaaacaactcgttcactctgaactacagtcagagaccgtc
agagctactctggcatcctcactgaaaggagagagaggggagcctggggccaaaggtgac
cagggagcacctgggattaaaggtgatgcaggatttcctggagtgccaggtcctcctggt
cctcctggtcatccaggacaagaaggtgcaagaggacctaaaggaagtgctggtgagcca
ggacatgatggccctcctggacagagaggccgtgaggggccaacaggacccagaggagaa
ccaggccctcctggagtgggtgagaaaggagagaaaggggtatctggagagcctggacct
tctggacctgcaggaccacctggacctatgggactcagaggtgaaatgggtgctccgggt
actgtgggtcttccaggggctcctggtcctcaaggcttccgtggagatgctggtgatcct
ggaccaaaaggagagagaggacctgcagggcctcctggagctaaaggtgatcaaggagag
aaagggccccgtggtgttactggagaaccagggcagccaggacccatcggtccaccagga
gagaaaggacccaaaggatcagcaggtgcccctgggccagatggtgcaaagggaaatcgt
ggggaccaaggaccaactgggttgccaggtccacgtggaccagctggacctccaggagat
gcaggcgtgccaggaactccagggcttcaaggaccaccaggtttgccaggaacaccagga
cagcctggggctaaaggtgaaccaggtgaacctggaagagttatcactacaggctctgct
tccaacactgtggctattcctggaccccctggacctcctggaccagctgggcctgctgga
cctcctggactgtcaggtcccattggccctgctggtcttcctggcccggctggacccaag
ggaggaaagggtgacaagggtgatgatggtgaacctggcatttctgcaaaatctgttgaa
agagtcaagtttgagcctgttgctggtcttcctggtcctcctggcccccctggaccacct
ggagaaccagggaaacctggtgaaggcaaaactggcctaccaggacccccaggtccacct
ggagagccaggtattggtctccctggtccacctggtgacaaaggtgaaccaggaagcttt
gtacccacctcagaaacctttttcgctggaccccctgggcctcctggacctcctggacct
caaggagagcctggtcatcctggactaccaggagaacctggagttggttttccagggcct
gaaggcccaagtggacccccaggtcctgaaggcttaccaggccctcaaggaccaccaggc
ccagaagggccaccaggtccaaaaggtgatgctggtgtcccaggggcccctggcatccca
ggatattcttatggtggaggcagaagctcacctggaccaccaggtccacctggacctcca
gggcctcctggacctcctggtgatgcctctggctctccagacatttctcagcagcttagt
gaccttcttagaaatggtggcattagggaatacttcactggtcctcctgggcttcctgga
ccacctggaagtgtatctgatgatgatttggctaatcgtgtaatcagttacatacaaaga
gaggaggtgaggcagtatctggtaggtcccccaggaccacccggacctccgggtattcca
ggcctcaaccctcaggaagtagctggaagagtcctcaatcttatgaatgagcagggtatg
ctgacgcaatctggacctccaggcccacctggccctccaggacttcctggaacaccctac
aatgatctcccaattctcttacaaaactcagaatatagaagattgactgggctaccgggg
cccccaggccctcctgggtctcctggcatcccaggacctcatggacccccaggtcttgtt
gctttcacaggcacatttggccttgaggatattcagaaatacctagagaatgctggtttt
agaggcccacctggacccccgggtcctccgggacctcagggtcctcctggaatcacaggg
ggcctggtgtcatatgctgagaatgcacatcaagagccaatccgtgctgaactgcaggaa
tatctaaagagtggcagggtgttccgtgaagagccaagccatagctttgcagagagcaaa
catttgcctgttgagactttggactaccccagtattgcagaacaagtggtgaactacatc
aaatctcatggtttgttgttgtgggatctcaaagatattcaagggccgccaggtcctcct
ggacctcctggacatcctggaatcagccattcatacagtacttatggcaacatgactgag
atacttaaaattattagagaccatggcatggttggaccaccaggaagacctgggcagaag
ggagaaataggatatcctggtcccagaggaccaagaggtcctagaggtgagcaaggcatc
cctggtctgccaggacttcctggtaatgatggactaagaggacaaaaaggagaaaaagga
gaagctgcctacataaatcacagaagaaagagaagtacaggtgtttag
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integrated database retrieval system
