Pangasianodon hypophthalmus (striped catfish): 113537381
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Entry
113537381 CDS
T05759
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113537381 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113537381 (vps8)
Membrane trafficking [BR:
phyp04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
113537381 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
VPS8_N
zf_RING_Vps8
TPR_Vps41
Clathrin
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_5
zf-RING_UBOX
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_11
Beta-prop_WDR5
zf-C3HC4
PHD_4
ANAPC4_WD40
EIF3I
Beta-prop_WDR3_1st
Beta-prop_HPS5
zf-C3H2C3
WDR55
Motif
Other DBs
NCBI-GeneID:
113537381
NCBI-ProteinID:
XP_026787629
LinkDB
All DBs
Position
Unknown
AA seq
1422 aa
AA seq
DB search
MSESPDTRSLVSASSQLNLMEIDAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFVLEDT
CLLNTENMDAHSCETSSLASSDSGDRAHLKRRRKAVETNATVHGSVLRHSVLKGISAQIV
SAADKVDAGLPTAITVSSVIAVGTSHGLALVFGKDQNQALRLCLGTTATGAEYGAVSALS
INHDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHVKFTDLPTLAVCNDSGG
SVFELSFSRRVMGMRTCESRCLFSGSKGEVCCVEPLHAAPELKDHPITHYCLLAMASLTK
ILVIGLKPSLKVWMTFPYGKTDPASVPQLAWQFVAAQKAVNPILAFCRGDTVHFLLVKKD
ESGTVHVIKQRQLQLNCDLISLTWLNSRTLVLMDSGEKLHVVDRPSQEELETLDLAEVQL
VYNSSHFKSLATGGNVSQALALVGEKACYQSVCSYGGQIVYLGTKSVHVMTLRNWRERVD
HLLKQEKFTEALSLAWSFHEGTAKAVLGLFGDPVKRKGVVADKMVEILFQYVERMLKKCP
EQGKIQLLEQHFQDMIPVVVDYGLLLQRTDLLFNQIYSRLVENSVAKGVFLESLEPYILS
ERIGCLTAPVMRDLLSYFQENGMMESVEGCLVHMDITNLDIQQVVQMCWDNQLYDAMMYV
FNSGMNDYISPMEKLFQVIGPPLREGKPLTDEQVVMGNKLLVYISCCLAGRAYPLGDIPE
DLVPQVKNQVFEFLIRLHSLEAIQEEEVYPYIRTLLHFDTREFLNVLALTFEDFKNDKQA
LEYQQRIVDILLKVMVDNSDFTPSQVGCLFTFLARQLAKPDNTLFVNRKLFDQVLEFLCS
PDDDSRHTERQQVLLELLQVGGMVQFDEGRLLALAEKAEFYQICEFLYEQKHLYDQIIAC
YLKDPLRKEEVYNYIHNILSMPGYSPEEKQTAWNKSLEHVKELVSINPAKAAELVAGHFI
SEVEPIITALQDDHLVFQFLRNLLNPSDGQKPQAVMDLGPELHELLVDLMCRFSPRQVTP
FLETSQSYRLEETVEITKQHELHEATAYLLEKKGDVQGAFQVLLQTLKEKLNTLVQESSE
QATPRPEGEEEEVADEDYTPLARVEEALSDIIALCHRSSHGLNQQQREALWFPLLEVMMS
PQKFLKGPNAKDTSDALKELTMKVLNSMSSFIALPAIIQRILQDPVYGKGKLAEIQGLIL
GMLETFNYEQTLLETTTNLLNSDLHWSLAHLRKAVSRGLHPRQDHCNICLQQYKRRQESE
EEIIIFSCGHLYHCQCLQRKEQGVVGKDPGHVGDRVHSWSCYKCTSSQGARPGDRLLAEG
GRVRSTSLAQTKVTSVHRGSAAETHHRKELTEVTLDAQQTQAWDQLRCMYRGPSRLAILT
ELTHSHSSERTGLVNPTNPGTGSIYHSENLSLKLSPPPMVEE
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtctccggatactcgcagtctggtgtcggcgtcctcacagctcaatttaatg
gaaatagatgctattgacgacaaagagttcgacatccctcaagttgacacgccaccgact
ttagagagtattctgaacgagcctgaggatgaggatgaacccttcgtcctggaggacaca
tgccttttgaacacagagaacatggatgcgcattcctgtgagacgtcctcccttgccagt
tcagacagtggagaccgtgcacacctaaagaggaggaggaaggcagtagagactaatgcg
accgtccacggctcagttctgagacacagtgtgctgaaaggcatctcggctcagatcgtc
tccgctgctgacaaagttgatgcaggcttgccaacagcgatcactgtgtccagtgttatc
gctgtgggaacgtcgcatggcctcgctctggtgtttggaaaagatcagaaccaggcgctg
aggctgtgcttgggtaccacggcgacaggggcggagtacggcgcggtgtcagctctcagt
attaaccacgactgcacgcgtctgctttgtggctttgctaaaggacagatcaccatgtgg
gatttggctaatgggaagctcctgcgcaccatcactgatgcccacccacccggcacggcc
attttgcacgttaagttcacagatctgccgacacttgctgtgtgtaacgacagcggcggg
tctgtgtttgaactctcattcagcaggagggtgatggggatgaggacatgtgagtctcgg
tgtttgttcagtggcagtaagggggaggtgtgctgcgttgagccactgcacgcagcccct
gagcttaaagaccatcccatcactcactactgcctgctggccatggcttcactcaccaag
attctagtgattggactgaagccgtctctaaaggtctggatgacttttccatacggcaag
acagatcctgccagtgtgccacagttggcgtggcagtttgtagctgcacagaaagcagtg
aaccccatcctcgccttctgtagaggagacactgtccacttcctgctggtgaagaaggac
gaatctggaactgtccatgtcatcaaacagcgacagctccaactcaactgtgaccttatt
agtctgacatggctgaattctcgcacgctggtgttgatggacagcggagagaagctgcac
gtggtggatcggcccagtcaggaggagctggaaactctggacctggccgaggtgcagctc
gtctacaacagcagtcattttaaatcgcttgctacagggggcaacgtcagccaggccctg
gctttggtgggagagaaggcgtgttaccagtctgtgtgcagctacggaggccagatcgtc
tacctgggaacaaaatctgtccatgttatgaccctcagaaactggagagagcgcgtcgat
cacttattgaagcaggagaagtttacggaggcgctctctttagcctggtctttccatgaa
ggcaccgctaaagcagtattgggtctgttcggcgaccctgtcaagcggaagggagtggtg
gctgacaagatggtggagatcttgttccagtatgtagagcgcatgctaaagaagtgtcct
gagcagggcaagatccagctgctggagcaacacttccaggacatgattcctgtcgtggtg
gattacggtctgcttctgcagaggacggatctgctgtttaaccagatctactcgaggctg
gtggagaactcggtggctaagggtgtcttcttggagagtctcgagccgtacattctgagc
gagcggattggctgcctgacagcgcccgtcatgagggacctcctcagttacttccaagaa
aatggtatgatggagagtgtggagggctgcctggtgcacatggacatcaccaacctggat
atacagcaggtggtgcagatgtgttgggataaccagctctacgatgccatgatgtacgtg
ttcaacagtggcatgaacgattacatcagccccatggagaaactctttcaggtgattggt
cctcctttgcgagaaggcaagcctctcacagatgaacaggtggtcatgggaaataagctg
ctcgtctacattagttgttgtctagcaggacgagcgtatcctttaggggacataccagaa
gaccttgtgccacaagttaaaaatcaggtgtttgagttcctgattcgcctgcactcacta
gaggccatccaggaggaggaggtgtatccgtacatccggaccctgcttcacttcgacacc
cgcgagtttctcaacgttctggcgctgacgttcgaggattttaagaatgacaaacaggct
ctggagtaccagcaaaggattgtggacattttactcaaggtcatggtggataactcggac
ttcaccccgtcccaggtgggctgcctgttcacctttctcgctcggcagctagccaaaccc
gacaacaccctctttgtcaacaggaagttgtttgatcaggttctggagtttctgtgcagt
ccagatgatgattccagacacacggagaggcagcaggtgctgttggagttactccaggtg
ggaggcatggtccagttcgacgaggggcggctcctcgccctggcagaaaaggcagaattc
tatcagatctgtgagtttttgtatgagcagaagcatctttatgatcaaatcattgcctgc
tacctgaaggaccccttaagaaaggaggaggtttataactacatccataacatcctgtcc
atgcctggttacagcccagaggagaagcagaccgcatggaacaaatccttagagcacgtt
aaggagctggttagcattaaccctgctaaagctgccgagctggtggcgggacacttcatc
agcgaggtagagcctattatcactgcactacaggatgatcatttggtgttccagttcctg
aggaacttgctgaatccaagcgatgggcagaagcctcaggctgttatggatctggggcct
gagctccacgagctcctggtggacttgatgtgccgtttcagtcctcgccaagtcacccct
ttcctcgagacgtcccagagctaccgcctggaggagaccgttgaaatcaccaagcagcat
gagctacatgaagccaccgcctacctgctggagaagaaaggagatgtgcagggagccttc
caagtgctgctacagacactaaaggagaagctgaacacacttgtccaggagagttcagag
caggccacgccgaggcctgagggagaggaggaggaggtagctgatgaagattacacccca
ctggccagggtggaggaagcccttagtgacatcatcgcactgtgtcaccggagctcacat
ggacttaaccagcagcagagagaggctctctggtttcctctcctagaggtgatgatgtct
ccacaaaaattcctcaagggccctaatgccaaggacacttctgatgcactgaaagagctc
actatgaaggtgttaaacagcatgtccagcttcatcgccctgcctgccatcatccagcgc
atcctacaggaccctgtatatgggaagggaaagttagcagagatccagggcctcattctg
ggcatgttggaaactttcaactatgaacagactctgttggagaccaccaccaatcttctg
aattcggacttgcactggtctctggctcacctgcggaaggccgtcagcaggggactccac
cctcgacaggaccactgcaacatctgcctgcagcagtacaaaaggaggcaagagagcgag
gaggagatcatcatcttcagctgtggtcacctgtatcactgtcagtgcctgcagcggaag
gagcaaggggttgttggtaaagatcccgggcatgtgggagatcgggttcactcgtggagc
tgttataagtgcacgtccagtcagggagctcgtcccggagaccgcctgctcgctgaggga
ggccgagtccgatccacttctctggcccagaccaaagtgacatccgtccatcggggatcc
gccgccgaaactcatcacagaaaggagctgactgaagtgacgctagacgcccagcagacg
caggcgtgggaccagctgcgctgcatgtacagaggaccctccagattggctatcctcaca
gaactcacccactcccacagcagcgagagaaccggcctggtaaaccccacaaacccagga
acaggaagcatctaccacagtgaaaacctcagcctcaagctttctccaccaccaatggtg
gaggaatag
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integrated database retrieval system
