Pangasianodon hypophthalmus (striped catfish): 113537523
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Entry
113537523 CDS
T05759
Name
(RefSeq) POU domain, class 2, transcription factor 1-like isoform X1
KO
K09364
POU domain transcription factor, class 2
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
113537523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113537523
03021 Transcription machinery [BR:
phyp03021
]
113537523
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
113537523
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
113537523
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
113537523
NCBI-ProteinID:
XP_026787838
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MADRGSASQDERLRADSTSAATESSKTAMENGIHGVQAAQTNGLDLQLKPNGQATSAISN
MQAQALLQQLSLSSAQQQQLFLQQAQQILAAAVQQQSAGQQSSTTGANISASAATPITQI
PLSQPIQIAPQLQPTGLNLQQFVLVQPGQLQPAQFIISPSPQGQTGLLQGLQAQNLLTQL
PQSQAHILQPQPGIPLTTQAATPTRKIAAMPSSALPTTKRVDVPLVEEASELEELEQFAK
AFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDA
ENMTSESAVSSPSDMSPGICEGLNRRRKKRTSIDTNIRIALEKSFLEQSQKPTSEEITLI
ADQLNMEKEVVRVWFCNRRQKEKRINPPSSSTPNTPIKTVFTNSPSVISGASNTLNVSSA
LPLSTASVPNLTLAGTALGPVTSNTATVISLAPAVATPAPTVTSPSLTPSATAAALTNTK
QEVVRTTETGSTIATSAAPGPGQFVVSPAGLGGANLAAMAAAAGLNPGIISPSQLTQGGA
LLSLAPASLGNALTPAALMNNTTLATIQALASGGALPITSIDGNGNVLFANTSAGGPTPN
LMTTPVLFNSPLSLLPTSVLSAGGAGGGPLNLQVTGDAHQSTVPVKSITVASKAQ
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagaggctcagcgagtcaagatgagcgcttgagagcagattctacaagcgca
gcaacagaatccagtaaaactgccatggagaatggaatacatggagtccaagctgctcaa
acaaacgggctggacttgcagctgaaaccaaatggacaagcaacaagtgcaatcagcaac
atgcaggcacaagccttgctccagcagttgagtctgagttcagcgcagcagcagcagttg
tttctgcagcaggctcagcagatcctggcagccgctgtgcagcagcagtcagcaggccag
cagagcagcaccactggagccaacatctctgcttctgctgctacacccatcacccagatc
ccgctctcacagcctatccagatcgcaccccagctgcagcctacaggtcttaacctgcag
cagtttgtgttggtgcagccgggacagcttcagcctgctcagtttatcatctccccttca
cctcaaggccagactggccttcttcaaggccttcaagcccagaatcttctgacacaacta
cctcaaagtcaagcccacatcctgcagcctcagccaggcattcctctgactacacaggca
gcaacacctacacgaaagatagctgctatgccatcttctgcgctgcccacaacgaagcgg
gtggatgttcctctagtggaggaggccagtgaactggaggagctagagcagtttgccaag
gccttcaaacagagaaggattaaactgggctttactcagggagacgttggcttggccatg
ggaaagctgtacgggaatgactttagccagaccaccatctcccgctttgaggccttgaac
ttgagcttcaagaacatgtgcaagctcaaacctttgttggagaagtggctcaatgatgct
gaaaacatgacgtcagaatctgcagtttccagtcccagtgacatgtccccaggcatctgt
gagggtctaaatcgacgccgtaagaaaagaaccagcattgataccaacattcgcattgcc
ttggagaaaagctttctggagcagagccaaaagcctacctctgaggagataacgctgatc
gccgatcagctcaacatggaaaaggaggtggtgagagtgtggttctgtaaccgccggcag
aaggagaagaggatcaaccccccgagcagcagcacacccaacacccccatcaaaacggtc
ttcaccaactccccatcggtgatatccggtgcatcaaacacactgaatgtcagttcagcg
ctccctctcagcactgcctctgttcccaatctcacacttgctggtacagctctaggacca
gtcacctcaaacactgcaacagtcatctctctggcacccgctgtcgccactccagctccg
actgtgacgtccccgtcacttactccctctgctacagcagcagctctgaccaatacaaaa
caggaagtggtcaggacaacagagactgggtccaccatagcaacatcagctgcaccgggg
cctggacagtttgtcgtgtctccggcagggctaggtggagcaaatctggcagccatggca
gcagcagcaggacttaacccagggattatttcaccctcccagctaacacaggggggggca
ttgctaagcttagctccagcatctcttggaaatgctctgactccagcagcactgatgaat
aacaccacactggccactattcaggctcttgcatctgggggtgcgttacccataacctct
atcgatggtaacggcaacgtgctctttgccaacaccagtgcaggaggtcccacgcccaat
ctgatgactactcccgttctgttcaactcacccctgtctctgctccccaccagtgtgctt
tcagcgggcggagccgggggcgggcctctcaacctacaggttactggtgatgcgcaccag
agcactgtgccggtcaaaagcatcactgtggcctccaaggctcaatga
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