Pangasianodon hypophthalmus (striped catfish): 113537583
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Entry
113537583 CDS
T05759
Symbol
poll
Name
(RefSeq) DNA polymerase lambda isoform X1
KO
K03512
DNA polymerase lambda [EC:
2.7.7.7
4.2.99.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03410
Base excision repair
phyp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
113537583 (poll)
03450 Non-homologous end-joining
113537583 (poll)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113537583 (poll)
Enzymes [BR:
phyp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
113537583 (poll)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
113537583 (poll)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
113537583 (poll)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_lambd_f
DNA_pol_B_thumb
HHH_8
BRCT
HHH_5
HHH
BRCT_2
NTP_transf_2
LIG3_BRCT
PTCB-BRCT
HHH_3
Csm6_6H
Motif
Other DBs
NCBI-GeneID:
113537583
NCBI-ProteinID:
XP_026787943
LinkDB
All DBs
Position
Unknown
AA seq
558 aa
AA seq
DB search
METHGIMKAFPKVKRHRPHQGKDVPPVKKSPSQPITGNVFQGVCVHIVPAGIGNARCDIF
QQQIVQNGGQVEAAYGPSCTHVVVDESVDRERALRLLKMETLPPAVQLVKCTWLSACISE
KKFLSTEDYRLHPCNRSPQDAPSEEPKQNVVSRIPIPEEKQPPDHKSAQDDPADVVPETQ
EEPLEEDAVSQNDLEALISGVKHDSGASGDTQNVSEKTKVLGKWVCAQSSQTKSKNHNNH
ITDKLEQLAKMYTHTGDKWRALSYSKAVNALKSHHKPISSYEEACKIPGIGKSMANKIVE
IMESGHLRKLDQFGEAVPILEMFTNIWGVGSKTAQLWYQQGFRTLEDIRTKVTLTHTLRI
GLKHYDDFLDRMPRSEAAAIEKTVREAAHSVNPDLQVVACGSYRRGKLTCGDVDVLITHP
DGQSHKCVFSKVLQILHQNGFLTDDLVSHEENGEQKYMGVCVLPGPGQRHRRLDVIVVPQ
DEFACALLYFTGSAHFNRSMRALAKTKAMSLSEHSLNTGVVRERGVKVVPGLPLSTPTER
AVFEHLGIPYREPHERDW
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggagactcacggtattatgaaagccttcccaaaagtgaagagacatcggccacatcag
ggtaaagatgttcccccagtcaagaaatctccgagtcagcctattactgggaacgtattt
cagggtgtctgcgtccatatagtccctgctggcatagggaatgcccgatgtgacatattc
cagcagcagatcgtgcagaatggaggccaagtggaagctgcttacggtcccagctgcacg
cacgtggtcgtggacgagtcggtggacagggagcgagcgttgaggctgctgaagatggaa
acccttccccctgctgtgcagctggtaaagtgcacttggctcagtgcttgcatctctgag
aagaagtttctgagcacagaagactacaggcttcatccatgcaaccgtagtcctcaggat
gctccctctgaggagccaaagcagaatgttgtcagccgcatccctattcctgaggaaaaa
cagccaccggatcacaaatcagctcaagatgatccagctgacgtggtgcctgagactcag
gaagaacctctagaggaagacgctgtgtcacagaacgatttggaggctctgatcagtggg
gttaaacatgattctggcgcttcaggtgacacgcagaatgtatcagaaaagacaaaggtg
ctgggaaagtgggtgtgtgcccagtcgtctcagacaaagagcaagaaccacaacaatcac
atcactgacaagctggagcagctagccaaaatgtacacacacacaggtgacaagtggagg
gcgctaagctactcgaaagcagttaatgcactcaagagccatcacaagccgatctcttca
tatgaggaagcctgtaagatcccaggcatcggcaagagcatggccaataagattgtggag
atcatggagagtgggcacctgcggaagctggaccagttcggggaggccgtgcccatcttg
gagatgttcactaacatctggggtgttggctcaaagactgcccagctttggtaccaacag
ggatttcgtacgctggaggatattcgcaccaaggtcactttgactcacacactgagaatt
ggcctgaagcactacgatgatttccttgatcggatgccaagaagcgaggcagccgccatc
gagaaaacggtgagagaggccgcacacagcgtgaacccagacctgcaggtggtggcgtgc
ggctcgtaccgacgtgggaagctcacatgtggagacgtggatgtgctcatcactcaccca
gatggccaatcgcacaagtgtgtctttagcaaagtgctccagatcctccatcagaacggc
ttcttgactgacgatttggtgagccacgaggagaacggcgagcagaagtacatgggcgta
tgtgtcctgccaggcccgggtcagcgccatcggaggctcgatgtcattgtggtgccacaa
gatgaattcgcatgtgctctactctacttcactggctcggcccatttcaaccgctccatg
cgtgcactcgccaagaccaaggccatgagcctgtcagaacactcgctgaacaccggcgtg
gtgcgcgagcgtggcgtgaaggtggtaccaggtttgccactgagcacgcctactgagagg
gcggtctttgagcatctgggcatcccatacagggagcctcatgagagagactggtag
DBGET
integrated database retrieval system
