KEGG   Pangasianodon hypophthalmus (striped catfish): 113537646
Entry
113537646         CDS       T05759                                 
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    113537646 (taf5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:phyp03021]
    113537646 (taf5)
   03036 Chromosome and associated proteins [BR:phyp03036]
    113537646 (taf5)
Transcription machinery [BR:phyp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     113537646 (taf5)
   Coactivators
    SAGA/TFTC/STAGA complex
     113537646 (taf5)
Chromosome and associated proteins [BR:phyp03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     113537646 (taf5)
    STAGA complex
     113537646 (taf5)
    TFTC complex
     113537646 (taf5)
    SAGA complex
     113537646 (taf5)
    SLIK complex
     113537646 (taf5)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 Beta-prop_VPS8 Beta-prop_WDR36-Utp21_1st NBCH_WD40 WD40_MABP1-WDR62_1st ANAPC4_WD40 PAC11 DSE1_N Beta-prop_WDR75_1st Beta-prop_Aladin CFAP251_N Beta-prop_TEP1_C Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_IFT140_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_HPS5 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_SPT8 ASA1 Beta-prop_WDR19_1st Beta-prop_DCAF12 Beta-prop_NOL10_N Tricorn_2nd WD_LRWD1 Beta-prop_Nup120_160 PEP5_VPS11_N Beta-prop_ACSF4 LisH_PAC1 WD40_like PROPPIN RAB3GAP2_N LisH_TPL
Other DBs
NCBI-GeneID: 113537646
NCBI-ProteinID: XP_026788049
LinkDB
Position
Unknown
AA seq 733 aa
MAAVHDGPSDVESEKETKPDILSEESAANLPGITLSSSPLAPPSAVAPKAEEQQKTLLAV
LQFLKRNNLTESVDILRREARIQDELEEARGTDAAAPGLNSGSGDNSSLLSRVSSQSGAP
AKAGGEDQPDVSVVLSAYSQQGDPSLYQVYYSGLKKFIESVLDCHRAELSQLFYPLFVHM
YLELVYNNHENEAKAFFEKFSGDQECYYQDDLRVLSGLTKKEHMKGNETLLDFRTSRFVL
RISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQIDSTSGSLAGEARREA
NKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGSKSKKQDPNAPQQNRI
PLPELKDSDKLDKIMYMKEATKRLRLGPEILPSICFYTFLNAYQGLTAVDITDDSSLIAG
GFADSTVRVWSVTPKKLRKVKSAADLSLIDKESDDVLERIMDEKTASESKILYGHSGPVY
AVSFSPDRNYLLSSSEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSAHGYYFVSGGHDR
VARLWATDHHQPLRIFAGHLSDVTCTCFHPNSNYMATGSADRTVRLWDVLNGNCVRIFTG
HKGPIHSLAFSPNGKYLASGSTDGRVLLWDIGHGLMIGELKGHSDTIYALKFSRDGEILA
SGSMDNTVRLWDAIKAVDDVETDDFTAATGHIHLPDNSQELLLGTYLTKSTAVIHVHFTR
RNLLLAAGAYISQ
NT seq 2202 nt   +upstreamnt  +downstreamnt
atggcggctgtgcatgatggaccgagcgacgtcgagagcgagaaagaaacaaaacccgac
attctgagcgaggagtcggcagcaaacctgcccggaataacgttgtcctcgtcgccgctc
gcacctccttctgccgtagcgcccaaagcagaggagcagcagaagactttactcgccgtg
ctgcagttcctgaagaggaacaacctaacggagtcggtggatatcctgcggcgcgaggca
agaatacaggacgagctagaggaggcgcgcgggacagacgctgcagcaccggggctgaat
tccggctccggagacaacagctcactcctcagccgtgtgtcttcccaaagcggcgctccg
gctaaagcaggtggagaggaccagccggatgtcagcgttgtcctctcggcgtacagccag
cagggggatccttcattgtatcaggtttactacagcgggctgaagaagttcatcgagtcg
gtactggactgccacagggccgagctgtcgcagctcttctacccgctctttgttcacatg
tacctggagctggtttacaacaaccatgaaaacgaagcaaaggcattctttgagaagttc
agcggtgaccaggaatgctactaccaggacgacctgcgtgtgctctcaggcctcaccaag
aaggagcacatgaagggtaacgagacgctgctggatttccgcacaagtcgcttcgtgctg
cgcatttcgcgcgactcctaccagctgctgaagcgccaccttcaggagcgccagaacaac
cagatctggaacatcatccaggagcacctctacatcgacatcttcgatggcatgccacgg
agcaagagtcagatcgacagcacgtccggcagcctggctggagaggcccgccgagaggcc
aacaaagccaaggtgttctacggattgctgaaggagcccgagatcgaggtccctctcgac
gatgaagatgaagaggctgagaacgaagagggcaaacccaagaagaagaaacccaagaag
gacagcatgggttcaaaaagcaagaagcaggaccccaatgcaccgcaacaaaacaggatt
cctctaccagaactaaaggactctgataaactggacaaaatcatgtatatgaaagaggcc
acgaagaggcttcgtctaggcccagaaatactgccctcgatatgcttctacacgttcctc
aacgcttaccagggtctgacagcagtggacattacagacgactcaagtctgatagcagga
ggcttcgccgactccacagtgcgtgtctggagcgtcacacccaagaaactccgcaaggtc
aaatccgcagcagatctcagtctcatagacaaggagtcagatgatgtgctggaaaggatc
atggacgagaaaacagccagcgagtccaagatcctgtacggccacagcgggccagtgtac
gccgtcagcttcagtccagacaggaattatctgttgtcgagttcagaagatggcaccatc
aggctgtggagcttgcagacatttacctgtctggtagcgtataagggacacaattaccca
gtgtgggacactcagttctctgcacatggatactattttgtgtctggaggacatgacaga
gtggcacggctgtgggccactgaccaccaccagccgctgcgcatattcgccggacatctc
tctgacgtcacctgcacctgcttccacccgaactccaactacatggccacaggctcagcc
gatcgcaccgtgcgcctctgggacgtcctgaacggcaactgcgtccgcatttttacagga
cacaagggaccaatccactctttggcattctcgcccaacggcaagtacctggcgtctggc
tcaaccgatggcagagttctgctgtgggacatcggccacggactcatgattggcgaactg
aagggtcacagcgacaccatctatgcactcaagttcagcagagatggagagatcctcgct
tcaggctccatggacaacacggtccggctgtgggacgccatcaaagccgtcgacgacgtg
gaaacggacgatttcacagcagccacgggtcacattcacttacccgacaactctcaggag
ttattactggggacgtacctgaccaaatccaccgccgtcatccacgtccacttcaccaga
cgcaacctgctactggccgccggtgcatacatctcccagtga

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