Pangasianodon hypophthalmus (striped catfish): 113537698
Help
Entry
113537698 CDS
T05759
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113537698 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
phyp03019
]
113537698 (exosc1)
Messenger RNA biogenesis [BR:
phyp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113537698 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
113537698 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
113537698
NCBI-ProteinID:
XP_026788126
LinkDB
All DBs
Position
Unknown
AA seq
198 aa
AA seq
DB search
MLCLLNMINDCLSGERLCSVEDCIPGAGTYLRHGSIYASLAGYVLRRNEGEELPVISVVK
ETEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRKEDVRATEKDKVE
TYKSFRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGVQMVPISWCEMQCPRT
HNKEFRKVARVQPEYLQA
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgcctcttaaacatgattaatgactgtttgtcaggtgaaaggctttgcagcgtg
gaggactgcatccccggcgcaggcacgtatctgcggcacggctccatttatgcctcgctg
gcaggctacgtgctcaggaggaatgaaggcgaggagctaccggtgatctcggtagttaaa
gagacagaagcacagcttttgcccgacgtcggagccatcgtcacctgtaaggtgacgagc
atcaacccacggtttgctaaagtgcacatcctctacgtgggatctactcctctcaaagac
aggttcagaggcacgattaggaaagaagacgtgagagcgacagagaaagacaaagtggag
acgtataaaagtttcaggcccggtgacatcgtcctcgccaaagtgatctcattgggcgac
gtgcagtcgaactacttgctgaccacggcggagaacgaactgggcgtggtcgtggcccac
agcgaggcaggagtacagatggttcctatcagctggtgtgagatgcagtgtcctcgaacg
cacaataaagagtttcgcaaggtggcgcgagtgcagccggagtacctgcaggcgtga
DBGET
integrated database retrieval system
