Pangasianodon hypophthalmus (striped catfish): 113537974
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Entry
113537974 CDS
T05759
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113537974 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113537974 (smarcd1)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113537974 (smarcd1)
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113537974 (smarcd1)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
113537974 (smarcd1)
PBAF complex
113537974 (smarcd1)
GBAF(ncBAF) complex
113537974 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
113537974
NCBI-ProteinID:
XP_026788550
LinkDB
All DBs
Position
Unknown
AA seq
521 aa
AA seq
DB search
MAARGGFQQAASGGGGGGGGAGMGPGPPVPGGGGPGMAPGTPAGRMGPAGPQNPMYRSPM
PGPGYPRPGMPPANRMTPQGPPMGPPGYGASPVPRPGMPVMDPSRKRPAPPQIPQQVQQQ
QQQNRNQHAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKR
PIKQKRKLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFS
SFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQ
FKLDPRLARLLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKF
SEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQ
QEIAGLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPE
EERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgtggcggttttcagcaagcggcatctggaggcggaggaggcggcggaggc
gccgggatgggaccaggacctccggtaccgggtggaggaggaccgggcatggctcctgga
acgcctgcaggaaggatgggacccgcggggccgcagaatccaatgtaccgttccccgatg
cctgggcctggatacccgagacccgggatgcccccagcaaaccggatgactcctcaaggc
ccacccatgggtcctccaggctacggcgccagtccagtacctcgccctggaatgccagtc
atggacccgtctcgcaagaggcctgcaccacctcagatcccacagcaggtccaacaacag
caacaacagaaccgcaaccaacatgccaagaagaagaagatggctgataaaattctacct
cagagaatcagagagctagtcccagagtctcaggcgtacatggatctgctggcttttgag
aggaagctggatcaaaccatcatgcgcaagagactcgatatccaggaggcactgaagaga
cccatcaagcaaaaacgaaagctgcgaatttttatctccaacactttcaaccctgccaag
cctgacgctgaggatggcgagggaactgtagcatcatgggagctgcgagtggaaggccgg
ctgctcgaggacactgctgtatctaaatacgaggccaccaagcagaagaggaaattttcc
tctttcttcaagtctttagtgattgaattggacaaagacttgtatgggcctgacaatcat
ttggtagagtggcacagaacacccactactcaggagactgacggctttcaggtgaaaagg
cctggagacgtgggagtgcgctgtactgtccttctcatgctcgactaccagcctcctcag
tttaagctggaccccagactggctcgcctgctgggcatccatacccagaccagacccgtc
atcatccaggctctgtggcagtacgtgaagacacacaaactgcaggacccacatgagcgc
gagttcatcaactgtgacaaatacctccagcagatctttgagactcagaggatgaagttt
tctgagattcctcagcggctgcatgctctgctgatgcctcccgaaccgatcatcattaac
catgtcataagtgtggacccgaatgaccagaagaagacggcctgctatgatattgacgtt
gaagtggatgatacacttaagacccagatgaactcttttctgctgtccactgccagtcag
caggagattgcaggcttggataacaaaattcacgagaccattgagaccatcaatcagctg
aagactcagagggagttcatgctgagctttgcccgtgatcctcagggcttcatcaacgac
tggctacagtcccagtgcagggacctcaagaccatgaccgatgtggtaggaaaccctgaa
gaagagagaagagccgagttctatttccagccgtgggctcaagaggctgtatgtcgctac
ttctattccaaggtccagcagaggagacaggagctggagcaagcgctgggcatcaggaac
acataa
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integrated database retrieval system
