Pangasianodon hypophthalmus (striped catfish): 113538039
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Entry
113538039 CDS
T05759
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5-like isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
phyp03036
]
113538039
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
113538039
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_CHD1_Hrp3
PHD_2
DEAD
Chromo_MIT1
AAA_22
Motif
Other DBs
NCBI-GeneID:
113538039
NCBI-ProteinID:
XP_026788652
LinkDB
All DBs
Position
Unknown
AA seq
2000 aa
AA seq
DB search
MPGSLSNEEEGQDDLDFEDDVPDEDEETEHVRVPLSPLERFFSDDDSIKQKKKKPSKQKE
GRVPKVKKKKKEGGSSEHEDVSDREDQRSGSESSSYGMLKKKKKKPREKKEKKGKWRKKD
DDDDEDDDDGNTKEPKSSSQLMEEWGLEDVQYAFSEDDYKTITNYKAFSQFLRPLIAKKN
PKIPMSKMMTVLGAKWREFSANNPFKGSSATAVAAAVAAAVETVNITPSISISSVQQLSP
TGQVKKAKTKEGKGPSARKKSKQPKDTKKKAKAKKPKLKAGQSSKRKKASSSEDDFLDDF
SDFDDISIHSASVRSDASGVPKKKTRRGRKKRKREDGDGYETDHQDYCEVCQQGGEIILC
DTCPRAYHLVCLEPELEKAPEGRWSCPHCEKEGIQWEAKDDDEEEEDAAGEEEDDHMEFC
RVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKILHWMWGD
PPLPPEPLSTQDGKKEDVPVKPPLKGHPERLLFVKWAGLSYWHCSWVSELQLELYHTVMY
RNYQRKNDMDEPPPFDYGSGEEELNNEKRKSKDPQYAAMEERFYRYGIKPEWLIIHRILN
HSFDKDGDVHYLIKWRDLPYDQCTWEIDDFDIPEYESFKQAYWDHREQMLGEDHRPLVVR
KGKSLKEEVKRREAPPETPVVDPTVKFEQQPWFIDATGGTLHPYQLEGLNWLRFSWAQGT
DTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDFYVVT
YTGDKDSRAVIRENEFTFEDSAVKSGRKVFRMKKDIPVKFHVLLTSYELITIDQAILGSI
TWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFN
NLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY
YKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGNLL
VKSSGKLTLLQKMLKKLKDNGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGGITGGLR
QEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ
NKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEE
LFKDDVEAIGDSKDGEEGSVIHYDDNAISKLLDRSQDATEDTEIQNMNEYLSSFKVAQYV
VREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDT
SQEDQGMCVGSEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQLKSDRDKPLPP
LLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLKGKSEKEFRAYVSL
FMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKYSTPDLI
PAGLELKKLTESLSSDPNTPVPASPAPTQPSTPVPSDKPESGPVPPEDKDSAEHDSTKTV
ETEQFRLSSQTSKESESYPDKMSESEELKRGGAEQKSNEENEKKDDSPAESEPSTNQTQP
ISKQNEQSTNQTALIGQQSKDVENTAEKTEKDASSAMKLEDKEPKQAVSHEPKSEDATES
QLNGEKETRDEVDENQKDEKNGAKTRFMFNIADGGFTELHTLWQNEERVAVSSGKMYDIW
HRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMNKGNYLEMKNKFLARRFKLL
EQALVIEEQLRRAAYLNMTQDSTHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAV
LHKVLNQLEELLSDMKADVTRLPSMLSRIPPVSARLHMSERSILSRLTNREPQPQQPFPQ
GSFACSSMYSNSFGGGFRGPAGAAMVNYSQMPLGPYVSVSSNGPPVPSSHMDKKSSEVLR
DVSPPDLKSSKPSDVICIED
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcgctgagcaacgaggaagagggccaagacgatttggattttgaagacgac
gtgccagatgaggatgaggagaccgaacacgtccgtgtgccgctctcacctctggagcgc
ttcttctcggacgacgactcgatcaagcagaagaagaagaaacccagcaagcagaaggag
ggcagggtgcccaaagtgaaaaagaagaagaaggagggtggctccagcgagcacgaggat
gtgtcggacagggaggaccagcgctccgggagcgagagcagcagctacggcatgctgaag
aagaaaaagaagaagcctagagaaaaaaaggagaagaagggcaaatggaggaagaaggac
gatgatgatgacgaggatgacgacgatggaaatacgaaggaacccaaatcttcgagtcag
ctgatggaggagtggggtctcgaggacgtccagtacgccttctctgaggacgattacaaa
accatcaccaactacaaggccttcagccagttcctcaggcccctcatcgccaagaagaac
cccaagatcccgatgtccaagatgatgacggtgttaggcgctaaatggcgcgagttcagc
gccaacaacccgtttaaaggcagttcggcgacggctgtagccgctgcagtggctgccgca
gtggaaacggtcaatatcacgccttcaatctccatcagcagcgtccagcagctctctcca
accgggcaggtcaaaaaagccaaaaccaaagagggcaaggggccgagtgcaaggaagaag
agcaagcagccaaaggacacgaaaaagaaagcaaaagccaagaagcccaaactgaaggca
ggccagagcagcaagaggaaaaaagcctcctcgagcgaggacgatttcttagacgatttc
tctgactttgatgacatcagcatccacagtgcctctgttcgctccgatgcctcgggggtg
cccaagaagaaaacgaggcgaggacgcaaaaagaggaaacgagaggacggagacggctac
gagacggaccatcaggactattgtgaggtgtgtcagcagggtggtgagatcattctgtgt
gacacctgcccccgagcctatcaccttgtgtgtctcgagcccgagctggagaaggccccc
gagggcagatggagctgccctcactgcgagaaggagggaattcagtgggaagcgaaggat
gacgatgaggaggaagaggatgctgcaggagaggaagaggacgatcacatggagttctgt
cgagtgtgtaaagacggtggagagctgctgtgctgtgacacgtgtccttcctcctaccac
atccactgcctgaacccgcctctgcccgagatccccaacggagagtggctgtgcccgcgg
tgcatgtgcccccctcttaaagggaaagttcagaagattctgcactggatgtggggggat
ccgcctttaccccccgagcctctctccactcaggatggtaaaaaggaggacgtaccggtc
aaacctccgctaaagggtcatcctgagaggctgctgtttgtgaagtgggcgggtctgtcc
tactggcactgttcctgggtcagcgagctacagttggagctctatcacacggtcatgtac
aggaattaccagaggaagaacgatatggacgagcctccgcccttcgactacggctcaggt
gaagaggagctcaacaacgagaagaggaagagcaaagacccacagtacgccgctatggag
gagcgtttctatcgctatgggatcaaacctgaatggctaatcatccaccggatcctcaac
cacagttttgacaaagacggagacgttcactacctgatcaaatggagagatttaccgtac
gaccagtgcacctgggagatcgacgacttcgacatccctgaatacgagagttttaaacag
gcctactgggaccaccgggagcaaatgctgggtgaagaccatcgtcccctagtggtgaga
aaaggaaagagcctgaaagaggaagtgaagaggagagaagctcctcctgagactccagtt
gtggatcccactgttaaatttgagcagcagccatggttcatcgatgctacaggaggaact
ttgcacccgtaccagctggagggtctgaactggctgcgtttctcctgggcacagggaacc
gataccatcctggctgatgagatgggactgggcaagacggtgcagacgatagtgttcctg
tactcgctctataaagagggtcactctaaaggcccgttcctggtcagcgctcctttgtcc
accatcattaactgggagcgagaatttgaaatgtgggctccggatttttatgtggtgacg
tacacgggcgataaagacagccgggcggtgatacgggaaaacgagttcacgttcgaggac
agcgctgtcaaatcaggacgcaaagtgttccgcatgaagaaagacatacctgtgaagttt
cacgtgctgttgacctcgtatgagttgatcaccattgatcaggctattctgggctccatc
acttgggcgtgtttggtcgtggatgaagcccatagactgaagaataaccagtctaagttt
ttcagaattctgaatggttataagatttactacaagctgctcctgaccggcacgcctctg
cagaacaatctggaagagttattccacctgctgaacttcctcactccagagcgcttcaat
aatctggagggatttctcgaggagtttgctgacatttctaaagaagatcagattaagaag
ctgcatgacctgttgggacctcacatgctgcggaggctgaaggccgacgtcttcaagaac
atgccagcgaaaacggagctaattgtgcgtgtggagctcagccctatgcagaaaaaatac
tacaagttcatcctgacgcgaaacttcgaggctctgaactctaaaggaggcggaaaccag
gtttcacttctcaacatcatgatggacctgaagaaatgctgcaaccacccgtacctgttc
cctgtggcggccgtggaggcccctgtgttacccaacgggtcgtacgatgggaacctgctg
gtgaagtcctcagggaaactcactctgcttcagaaaatgctcaagaagctcaaagacaac
ggacaccgcgtccttattttctcacagatgacgaagatgctggacttgttagaggacttc
ctggagtttgaaggctataaatacgagcgtattgatggcgggataaccggaggactgcgg
caggaggccatcgatcgcttcaacgctccgggagcgcagcagttctgtttcctgctgtct
actcgtgctgggggattgggaatcaatctggcaaccgctgatactgtcataatctatgac
tctgactggaacccacataatgacattcaggcgttcagccgagcgcatcgtattggacag
aataagaaagtgatgatctatcgctttgtgacgcgggcgtcagtggaggagcggattacc
caggtggccaagcgcaagatgatgctcacacatctggtggtgcgtccgggcctaggctcc
aaaacggggtccatgtccaagcaggagctggacgacatcctgaagtttggcacagaggag
ctctttaaagacgacgtggaagccattggtgacagtaaggatggagaggaaggcagtgtg
atccactacgatgacaacgccatctccaagctgctggaccgcagtcaggacgccaccgag
gacactgagatccagaacatgaacgagtacctcagctccttcaaggtggctcagtatgtg
gtgcgggaggaggacggagaggaggaggtgcagagggagatcattaaacaggaggagaat
gtggatcctgactactgggagaaactcctgcgccatcattacgagcagcagcaggaagat
ctggcacgcaatctggggaagggcaagcgcatccgcaagcaggtcaactacaacgacacg
tctcaggaggaccaaggcatgtgtgtgggctcagaatggcaggatgatctttcagacaat
cagtccgaatactcagtgggatccgaggatgaagatgaagatttcgaggagagacctgaa
ggaggaaggcgacagtctcgcaggcagctgaagagcgaccgggacaaaccgctgcctcca
ctgctagctagagtaggaggaaacatagaggtacttggttttaacgcgcgtcagagaaag
gccttcctgaacgccatcatgcgctggggtatgcctcctcaagacgccttcaactcccac
tggctggtccgagacctgaaggggaaaagcgaaaaagagttcagagcgtacgtgtcgctg
ttcatgagacacctgtgtgagccgggagcagacggagcggagacgtttgcggacggcgtg
ccgagggagggcctgtcccgacaacacgtcctcacccggattggagtcatgtctcttgtg
aggaaaaaggtgcaggagtttgagcatgtaaatgggaaatacagcactccagatttgatt
cctgcaggtctggagctgaaaaagctcacagagagtctctcttcagacccaaacacccct
gtaccagccagtcctgctccgactcagcccagcaccccggtaccatcagacaaacctgag
agtggtcccgttcctccagaagataaagacagcgccgaacatgacagcacgaaaacagtc
gagactgagcaattccgtctctcttctcagacatccaaagagtccgagtcatatcccgac
aagatgagtgagagtgaagaactgaaaagaggtggcgctgagcagaaatcaaacgaagaa
aacgagaagaaagatgactcacccgccgaatcggagccctcgaccaatcaaacgcagcca
atatccaagcagaacgagcagtccaccaatcagacggcacttataggacaacaaagtaaa
gacgtggagaacacagctgagaaaacggaaaaagacgcttcttctgccatgaagttggag
gacaaagaaccaaaacaagctgtttcccatgagcccaaatctgaggacgccactgagagt
cagctgaacggagagaaagaaacgagggacgaggtggacgagaaccaaaaagacgaaaag
aatggcgctaagacacgcttcatgttcaacattgcagacggaggctttacagagctgcac
actctgtggcagaatgaagaacgtgtcgctgtgtcatccggtaagatgtatgacatctgg
caccggcgccatgactactggcttttggctggcatcgtaactcacggctacgctcgctgg
caggacatccagaacgacccacgctatgccatcctcaacgagcccttcaagactgagatg
aacaaaggcaactacctggagatgaagaacaagttcctggcacggaggttcaagctgttg
gagcaggccctggtgattgaggagcagttaaggcgggcagcttacctgaacatgacgcag
gactccacacacccagccatggcgcttaacacacgttttgccgaggtcgagtgtctggcc
gagtcgcaccaacatctctctaaagagtctctggctggaaacaagccggctaatgccgtc
ctacacaaagtgctgaatcagctggaagaactgctgagtgatatgaaggcggatgtgaca
aggctgccgtccatgctctcccgcatccctcctgtatccgcacgactccacatgtctgag
aggagcatcctgagccgtctcaccaaccgagagcctcaaccccagcagccttttccacag
ggatcttttgcctgttcttcaatgtacagtaacagttttggaggaggatttcgaggtcct
gctggagctgccatggttaactacagccagatgcccctggggccgtacgttagtgtgtcc
tcaaacggtcctccagtacccagcagccacatggacaagaaatccagtgaggttttgaga
gacgtgtctccacctgacctcaaatccagcaaaccctcggacgtcatctgcatcgaagac
tag
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integrated database retrieval system
