Pangasianodon hypophthalmus (striped catfish): 113538329
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Entry
113538329 CDS
T05759
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113538329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113538329
03009 Ribosome biogenesis [BR:
phyp03009
]
113538329
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113538329
Spliceosome [BR:
phyp03041
]
Complex A
U1 snRNP components
U1 related factors
113538329
Complex B
113538329
Ribosome biogenesis [BR:
phyp03009
]
Eukaryotic type
Pre-60S particles
Helicases
113538329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113538329
NCBI-ProteinID:
XP_026789101
LinkDB
All DBs
Position
Unknown
AA seq
611 aa
AA seq
DB search
MPGYSDRDRGRDRGYGSSAPRFGGGRSGPPPSGKFGNPGDRLRKRHWNLDELPKFEKNFY
KEHPEVTRRSMQEVEQYRRAKEVTVKGRDCPKPIIKFHEATFPNYVMDVIKKQTWAEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLISVLREANQAINPKLLQMAEDRG
GRSRGGRGSYKDDRRDRYSSGGRRDFGSYRDRDGDRGYSSGPKAQNGSYSGGSSYNKSNG
SSSNYSSNNYNSGGNPNAFGNQNFQNQPFQGNQAPTQNGMNHPPFPFNPPQPPQQPPQPM
VPYPMPPAFPQ
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgccgggatattcagacagagaccgtggaagagatagaggttatggcagcagtgctcct
cgatttggtggaggccgcagtggacctcctccatctggaaaattcggcaatcccggcgac
agactgcgcaaacgacactggaaccttgacgagcttcctaaatttgagaaaaacttctac
aaggagcatcctgaagtcacccggagatcaatgcaagaggttgaacagtaccgcagggca
aaagaagtcacagtcaaaggcagagattgcccaaagcctattattaaatttcatgaagcc
accttcccaaattatgtaatggatgtaatcaagaagcagacatgggctgagcccactccc
atccaagctcaaggctggccgctcgcgctaagtggaaaagacatggtcggcatcgcccaa
accggctctggaaaaaccctggcatacctgttgccagccatcgtgcacattaaccaccag
cctttcctcgagcatggagatggtcctatttgcctggtgctggccccgactcgtgagctg
gctcagcaggtgcagcaggttgctgcagagtatggacgtgcctctcgcctaaagtccacc
tgcatctacggaggagctcctaaaggaccccagatccgagaccttgagagaggtgttgag
atctgcattgccacccctggtcgtctgatcgacttcctggaggcaggaaagaccaaccta
cggcgctgcacctacctggtgctggacgaggctgaccgtatgctggacatgggcttcgaa
ccacagatccgcaaaattgtagatcagatccgccctgacaggcagactctaatgtggagc
gccacttggcccaaagaggtgcgtcagctggctgaagatttcctgaaggagtatgttcag
atcaatgttggagctctgcagctcagcgccaaccacaacatcctgcagatagtcgacgtc
tgtaatgacggagagaaggatgacaaactaatccgcttgctagaggagatcatgagtgag
aaggagaataagaccatcatctttgtagagaccaaaagacggtgtgatgaactgacccgg
aggatgaggagagacggatggcctgccatgggaattcatggagataaaagtcagcaggag
agagactgggtcctgaacgagttcaagtacggtaaagcgtgcatcctcatcgcgacagac
gtggcctcgcgcggattagatgtggaggatgtgaaatttgtcatcaattatgactaccct
aactcctctgaggactatatccaccgaattggccgcacggcccgcagtcagaaaacgggc
acggcctacaccttctttacgcccaacaacatgaaacaggccagcgacctgatctcggtc
ctgcgcgaggccaaccaagccatcaaccccaaactgctccagatggcagaggaccgagga
ggtcgttccagaggcggtcggggaagctacaaggacgaccgtcgggaccgctattccagt
gggggtaggagagattttggtagctatagggatcgagatggtgacaggggttacagtagt
ggccccaaagcacagaacggcagttacagcggtggcagcagctacaacaaaagtaacggt
agtagcagtaactacagtagcaacaactacaacagtgggggaaacccaaacgctttcgga
aaccagaacttccaaaaccagccattccaggggaaccaggcgccaacccagaacggaatg
aaccaccctccattcccgtttaaccccccacaacccccccaacagcctccacagcccatg
gtgccctaccccatgccccctgctttcccccagtag
DBGET
integrated database retrieval system
