Pangasianodon hypophthalmus (striped catfish): 113538353
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Entry
113538353 CDS
T05759
Name
(RefSeq) probable ATP-dependent RNA helicase DDX17
KO
K13178
ATP-dependent RNA helicase DDX17 [EC:
5.6.2.7
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113538353
Enzymes [BR:
phyp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113538353
Spliceosome [BR:
phyp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113538353
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
113538353
NCBI-ProteinID:
XP_026789145
LinkDB
All DBs
Position
Unknown
AA seq
665 aa
AA seq
DB search
MRGSSSYGDRDRDRGRDRGPRFGSSRGGPPPPKKFGNPGDRLRKKKWDLSELPKFEKNFY
SEHPEIQRMNQYEVEEFRRKKEITVRGSGCPKPVPNFHQAQFPQYVMDVLLQQNFKEPTA
IQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTREL
AQQVQQVAYDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLHDYIQ
INIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTR
RMRRDGWPAMCIHGDKSQPERDWVLSEFRSGKAPILIATDVASRGLDVEDVKFVINYDYP
NSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLVDSGR
GSGGGRMRYRGSNSNNPNLMYQDECDRRMRSVGGSGGNSSKDNRGGSSYSRDGRSSRDDR
SSSSSSYRDRSRDGRNSYSSGDQYQSYNSSGGGGYSARAGGVSQSGGGSNSGPGGGQQNQ
SGPPQGPFNQGPPPPPQSGTGPGPQPLMAQQFAPPPPPQPMMGFMGPGPYSFGPPPPPPP
QQQRK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcagctcttcgtacggggacagagacagagaccgtggacgggacagaggaccc
cgctttggatccagtcgtggaggtccccctcctcctaagaagtttgggaaccctggagac
cgactgaggaagaagaaatgggaccttagtgagctgccaaagtttgagaaaaacttctac
agcgagcacccagagatccagcgcatgaatcagtatgaggtagaagagtttcgcagaaag
aaagagatcactgtcaggggctctgggtgcccgaagccagtgccaaacttccaccaggca
cagtttcctcagtatgtgatggatgtactgctgcagcagaatttcaaggagcccacagcc
attcaggcacaggggttcccactggctctcagtggcagggacatggtgggcattgcacag
actggatctggcaaaacgctggcctatctgcttccggccattgtgcacatcaaccaccag
ccgtacctggagagaggagatggacccatctgtctggttctggctccaacacgtgaactg
gcacaacaggtgcagcaggtggcgtatgactacggcaagtcttcccgaatcaagagcacc
tgtgtgtatggaggagcccctaagggtccacagatcagagacttagagagaggtgttgag
atttgtattgccacccctggtcgtctgattgacttcctggaggcagggaagacgaatctg
cgccgatgcacctacctggtgttggacgaggcagaccgcatgctggacatgggattcgag
ccccagatccgcaaaattgtagatcagatccggccggacaggcagacactgatgtggagc
gctacctggcctaaggaggtgcgtcagctggcagaggacttcctccatgactacatccaa
attaacatcggggccctggagctcagcgccaaccacaacatcctgcagattgtggacgtc
tgcatggagaacgaaaaggacaataagctgattcagctgatggaggaaatcatggcagag
aaagagaacaagaccatcatttttgtcgagacaaagaaacgctgtgatgagctgactcgc
aggatgaggagagatggatggccggcaatgtgcattcacggtgacaaaagtcagccagag
agagactgggtcctttcggaattccgcagtggtaaagctcccatccttatcgctacagac
gtcgcctcgcgtggactggatgtggaagatgtgaagttcgtcattaactacgactaccca
aactcttcagaggactatgtgcaccgtatcgggcgtactgcccgtagtaccaacaaaggc
acagcctacacattcttcacacccggaaacctacggcaggcccgtgacctggtgcgggtt
ctggaggaggcccggcaggccatcaaccccaaacttctgcagctggttgactctggacgc
gggtcaggaggaggaaggatgcgttaccgtggctccaactccaacaacccaaacctgatg
taccaggatgagtgtgataggcgcatgcgctctgtcggtggaagcggaggcaacagtagc
aaggacaaccggggcggcagcagctacagccgagacgggcgctcaagccgtgacgacaga
tcttcctcctcgtcttcgtaccgagatcgcagccgggacggtcggaatagctacagctcc
ggcgatcagtaccagagctacaacagcagcggcgggggaggctacagcgcacgggcaggt
ggagtgtcacagtcaggtggtggcagtaatagtgggccaggcggagggcagcagaaccag
tcgggaccaccacagggcccatttaatcagggtcctcccccaccaccacagtctgggacc
ggaccaggaccacagcccctgatggcccagcagtttgccccgcctccaccacctcagccc
atgatggggtttatgggtccagggccgtactcgttcggtccccctccaccacccccacct
cagcagcagagaaagtaa
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