Pangasianodon hypophthalmus (striped catfish): 113538376
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Entry
113538376 CDS
T05759
Name
(RefSeq) transcription activator BRG1-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113538376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
phyp03021
]
113538376
03036 Chromosome and associated proteins [BR:
phyp03036
]
113538376
Transcription machinery [BR:
phyp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113538376
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
113538376
Chromatin remodeling factors
BAF complex
113538376
PBAF complex
113538376
GBAF(ncBAF) complex
113538376
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
113538376
NCBI-ProteinID:
XP_026789188
LinkDB
All DBs
Position
Unknown
AA seq
1619 aa
AA seq
DB search
MSHDNCIIVAGRSRGMSTPDPPLGPSPGPGPSPGPMMGPGPSPGSSHGMMGPSPGPSTTS
GHSVSQQGAAGYTQQDSMHPMHKSLEGLHEKNVGEESRFGQMKAVSMRAGGHAGMGPPPS
PMDQHSQGYPSPLGSSDHVSSPLPAGAPPTSGPLLSSSCTSSSPLEGADSQPSRSGAQSN
TPGSSANPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQGQAMPS
LPPGGGGGPGTGPGPLGPNYSRGHVLSGPSVPPSGPNAVPPANGPPKTWPEGPMVNAATP
SNAPQKLIPPQPTGRPSPVPPSVPPAASPVMPPQTQSPGHPGHSAQPAPTIPLHQKHNRI
TPMQKPCGLDPVEILQEREYRLEARITHRIQELENLPGSLAGDLRTKATIELKALRLLNF
QRQLRQEVVVCMRRDAALETALDAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKH
QEYLNSILQHAKDFKEYHRSITGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMA
EDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAAQALKEKKKKKKKKKKLEN
AEGQPLALGPDGEPLDETSQMSDLPVKVIHVDSGKILSGVDAPKAGQLDTWLEMNPGYEV
APRSDSEDTGSEEDEEEEEEQPQPSQTTVEEKKKIPDPDSEDVSEVDARHIIEHAKQDVD
DEYGGAAFTRGLQSYYSVAHAVTEKVDRQSSLMVNGQLKQYQIKGLEWLVSLYNNNLNGI
LADEMGLGKTIQTIALITYLMEYKRLNGPYLIIVPLSTLSNWVYEFDKWAPSVVKVSYKG
SPAARRAFVPQLRSGKFNVLLTTYEYIIKDKQVLAKIRWKYMIVDEGHRMKNHHCKLTQV
LNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDL
NEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV
LLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFSGGIVQGPDLY
RASGKFEVLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDGTTKAEDRG
MLLKTFNDPESQYFIFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQQ
NEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ
DEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRRPRLMEEDELPTWIMK
DDAEVERLTCEEEAEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIEEEVRHKKT
TRKRKRDRDLDAGPSTSGTRGARDKDEDSKRQKKRGRPPAEKITPNPPSLTKKMKKIVEA
VIKYKESSNGRQLSEVFIQLPSRKELPEYYELIRRPVDFRKIKERIRSHRYRSLNDLERD
VMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSLRQKIEKEEESDGEESEEEEEEQDEGSES
ESRSVKVKIKLGRKERSAERGKGRRRGGRTRAKPVVSDDDTEDEREEERSNTASDEDQG
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacgataattgcatcattgttgcaggaagaagcagagggatgtccaccccagac
cctccattaggcccttcccctggtcccgggccttctcctgggccaatgatggggcctgga
ccctcacctggatcctcccatggcatgatgggcccaagtcctggaccctccaccacatct
ggtcactctgtctctcagcaaggagcagctggatacacacagcaggacagtatgcacccc
atgcacaaatctctggagggtctgcacgagaagaacgtaggagaggaatctcgttttggt
cagatgaaagctgtgtccatgagagcaggtggacatgctggtatggggcctccaccgagt
cctatggaccagcactcccagggctacccctctccattgggctcctcggatcacgtctcc
agtcctctcccggccggagcccctcctacctccggtcctctcctttcctcttcctgcacc
tcctccagtcctctcgagggcgctgactcccagccgagccgctctggggctcagagcaac
acccctggatcctccgccaacccgacaccctttaaccaaaaccagctgcaccagcttagg
gcacaaattatggcctacaagatgctggcacgcggacagcctcttcccgaccacctacag
atggcagtacagggcaagaggcccatgccaggcatgcagcaaggccaggccatgccaagt
ctgccccctggtggtggaggaggaccagggacaggtccaggacctctgggacccaactac
agtcgagggcatgtgttgagtggtcccagcgtgcccccgtctggcccaaatgctgttccc
cctgccaacgggccaccaaaaacctggcctgagggtcccatggtgaacgcagccacacct
tctaatgccccacagaagctgattcctccacagcccactggccgcccgtctccggtgccc
ccctctgtgccccctgctgcctccccagtcatgccccctcagactcagtctcctggacac
ccggggcactcggcccagccggcacccaccatcccgctgcatcagaaacacaaccgcatc
actcccatgcagaaaccctgcggcctggaccctgtggagatcctgcaagaaagagagtac
aggcttgaagcacgtataacacaccgtatccaggagctagagaatcttccgggatcacta
gctggagacctgcgtaccaaggccaccattgagctcaaagctctccgactgctcaacttt
cagagacagctgcgtcaagaggtggtggtgtgtatgaggcgtgatgcagctcttgagacg
gctctggatgcgaaggcttataaacgcagtaagagacaatccctgcgagaggctcgcatt
acagagaaactggagaaacagcaaaagatcgaacaggaacgcaaacgtcggcagaaacac
caggaatatctgaacagcatcctccagcatgccaaagactttaaggagtaccatcgctct
atcactggaaagatccagaagctgaccaaagctgtggccacgtaccacgccaacacggag
cgagagcagaaaaaagagaatgaacgcatcgagaaggagaggatgaggagattgatggct
gaagatgaagagggttacaggaagctgatcgatcagaagaaggataagcggctggcctac
ctgctgcagcagactgatgagtacgtggccaacctgaccgagctggttcgggcccacaag
gcggcccaggctctcaaggagaagaagaagaagaagaaaaagaagaagaagctggagaac
gcagaggggcagccgctagctttgggaccagatggagagccgctggacgagacgagtcag
atgagcgacctgcctgtgaaggtgatccatgtggacagcgggaagatcctgagcggagtg
gacgctcccaaagcgggacagctggatacctggctggagatgaatcctggatatgaggtg
gcgccgagatcagacagcgaggacacaggctccgaggaggacgaggaggaagaggaagag
cagccccagccatcacagactactgtggaagagaagaagaagattccagatccggacagc
gaggatgtgtcagaagtggacgctcgtcacatcattgagcatgctaagcaggatgtagat
gatgagtatggtggtgctgcgttcacacgcggtctgcagtcgtactactcagtggctcat
gcagtcactgaaaaggtggacagacagtcgtccctgatggtcaacgggcagctcaaacag
tatcagattaaaggtttggagtggttggtgtctctgtacaataataatctgaatggaatc
ctagctgatgagatgggtttaggaaagaccatccagaccatcgcgctcatcacctacctc
atggagtacaaacgcctcaacgggccctatctcatcattgtaccgctctcaactctttct
aactgggtctacgagtttgacaaatgggccccatctgtagtgaaagtctcgtacaaggga
tctcccgcagccagacgggcgtttgttcctcagctccgcagtggcaaattcaatgttctt
ctcaccacctacgagtacatcattaaagacaagcaagtactggcgaagattcgctggaag
tatatgatcgtggatgagggccaccggatgaagaatcaccactgtaagctgactcaggta
ctgaacacacactacctggctccaaggcgtgtcctgctgacggggacgccgctgcagaac
aagctgcctgagctgtgggccctgctcaacttcctgctgccaaccatcttcaagagctgc
agcaccttcgaacagtggttcaacgccccgttcgccatgactggagagaaggtggacctg
aacgaagaggagaccatcctgattattcgccgtctccacaaagtgctccgccccttcctg
ttacgtaggttgaagaaggaggtggaagctcagctacccgagaaggtggaatatgtgata
aagtgtgatatgtcagcgctgcagagggttctatacagacacatgcaggccaaaggggtt
ctgctcactgacggatctgaaaaagacaagaagggtaaaggcggcactaaaactctgatg
aacactatcatgcagttgaggaagatctgtaatcatccctacatgttccagcagattgag
gagtccttttctgagcacttgggcttctctggtggtatagtacaaggccctgacctgtat
cgagcttctggaaagtttgaggttctggaccggattcttcccaaactccgagcgaccaat
cacaaagttctgctcttctgccagatgacatcactgatgactatcatggaggactatttc
gcataccgcaactttaaatacctccgtctggatggtacgactaaggcagaggaccgcggc
atgctcctgaagacatttaatgatcctgagtcgcagtacttcatcttcctgctgagcacc
agggcagggggtcttggcctcaacctgcagagcgcagacacggtggtcatcttcgacagt
gactggaatcctcaccaggacctgcaggcacaggatcgagctcatcgtatcgggcagcag
aacgaggtgcgggtgttacgcttgtgcaccgtgaacagtgtagaagagaaaatcctcgct
gctgccaagtacaagctcaacgtggaccaaaaggtcatccaagcaggcatgttcgaccag
aaatcatccagtcacgagcgccgcgcgttcctgcaggccatcctggagcatgaggagcag
gacgaggaggaggacgaagttccagatgatgaaactgtgaatcaaatgatcgcaaggagc
gaagaggagtttgatcactttatgcgtatggatttggaccggcgtcgtgaagaggctcgg
aacccgaagcgcaggcctcggctcatggaggaagatgagcttcccacttggatcatgaag
gacgacgctgaggtcgagcggctcacctgtgaggaggaggcggagaagatgttcggtcgc
ggctcacgccagaggaaggaagtcgactacagcgactcgctcactgagaaacaatggctc
aaggctatagaagaaggcacactggacgagatcgaggaggaagtgcgccacaagaagacg
acgcgaaagaggaagcgtgatcgtgaccttgatgctggtccatctacatcagggacacgt
ggagcgagagacaaagacgaggacagtaagagacagaagaagcgtggacgacctccagca
gagaagataaccccaaacccacccagcctcaccaagaagatgaagaagattgtggaagct
gttattaaatacaaagagagcagtaatggccggcagctgagtgaagtcttcatccagctt
ccgtctcgtaaagagctccctgagtactatgagctgatccgcagacctgtcgacttccgc
aagatcaaggagcgtatccgcagccaccgctatcgcagtctgaatgacctggagagagac
gtgatgctgctgtgtcagaatgctcagacctttaacctggagggctcattgatttatgag
gactccattgtgctgcagtcggtgttcaccagcctgcgacaaaagattgagaaggaggag
gagagcgacggagaggagagcgaggaagaggaggaggaacaggacgaaggctcagagtct
gagtctcgctcagtgaaggtaaaaattaaactgggccgaaaggagcgcagtgccgaaaga
ggaaaaggcaggaggaggggagggagaaccagagccaaacctgtcgtcagtgatgatgac
accgaggacgaacgagaggaggagcgctctaacactgccagtgatgaagaccagggataa
DBGET
integrated database retrieval system
