Pangasianodon hypophthalmus (striped catfish): 113538673
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Entry
113538673 CDS
T05759
Symbol
ubr1
Name
(RefSeq) E3 ubiquitin-protein ligase UBR1 isoform X1
KO
K10625
E3 ubiquitin-protein ligase UBR1 [EC:
2.3.2.27
]
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113538673 (ubr1)
Enzymes [BR:
phyp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113538673 (ubr1)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
UBR box proteins
113538673 (ubr1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRT6_C
WHD_UBR1
zf-UBR
ClpS
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
113538673
NCBI-ProteinID:
XP_026789726
LinkDB
All DBs
Position
Unknown
AA seq
1740 aa
AA seq
DB search
MAEGEGPVNALQLCTRWWEASDQRSAILQYLAEKVPQIYCLQAEPQLVKEEERVQECILQ
PLEYFLFGEDPSVGLEKLQQRNGSSSSQLCGRVFKEGETVYSCRDCAIDPTCVLCMDCFQ
NSVHKSHRYKMHASSGGGFCDCGDLEAWKTGPCCSQHDSGTAIAMETDECVLEAALQERA
QVLFQVLLQYITDLMVWEEGDELPEEMEPRSKENTYYCVLYNDEHHSYDHVIYTLQRAIN
CNSTEAQAHTVLIDKEGRRAVRRGSLRSCQQAKELIRTSSEHITQQPLRVELLHSVVMAH
QTFALRLGTWFQQITGYSVGFRQVFCQVALEPSADSSKPCLISRLMLHDARLYKGARKVI
HELIFCSLLMETEYKRQFAMKFTELYKQLQEDFIRDDHERNISITALSVQIFTVPTLARQ
LIEEGNVIKVIIETVMEMLREHLDSNQRFHFQGYNSDKFLRVQVIFHDLKYILISKPTVW
TDQLRGKFLEGFTVFLGFLNCMQGMEEVKRQVGQHIEVEPEWEAGFTIQIQLRHILSMFQ
DWCSSDERVLLLAFQECHRALQRCTNQPFHSEPTDRYMCKHILHTRSYKVSQEPVSIHLP
ITRLLAGLYVLLCRTGAVKYLPDFVDPEQMDLPFFAEFPLRCVVLAAQVSAEMWRRNGLS
LVSQVYYYQDVKCRDEMFDKDIIMLQIAASKMDPNHFVMLILLRFELFEVFNGNCSSKDQ
DLQKQWNRLTEEMLYLLIIITGERYVPGVSNVTKEEVTMREVIHLLCIEPMAHSSMVKAL
PENENQETGLETVISKVATFKKPGVSGHGLYELKKECLKEFNPFFYHYTKSQHSKAEDAQ
KKRRAQEGSDKALRPPVPPPFTQAFSSIVRLLCCDVFVHVLRRVLQRAVEERSALWTEAM
IQRALHLVGQALLEEKNQLEACSVEEVTFDFSLKARKVGSDHGKSLFHFLSKMKSHPSLE
AHNDMINWTLQMFEIVKCLREKSIPSASCAADQTKAEESIHDKEKAERKRKAEAAKLHRQ
KIMAQMSAMQKNFIETHKMLYDNVPESGSQGEPVVSTESSVMELESRVAVGPKQGVCPAD
WETLTCILCQEEQEVQAQAPAMVLTACVQRSTVLTQCRGKTLTPKESSYPLFVPPDLAVG
THTGSCGHVMHATCWQKYFEAVQNTTRNRLHAELIIDLENGEYMCPLCKSLCNTVVPLVP
MEPSKLNYESAEMIGQFLTLPRWIQIVLARIKGLRVLQGAENTSETGKEETGLFLEDTQT
DFRSILSFGVQPPPKYSSSIMEMLVVCATTVHRVGLQTAPNELCPYVPVMTWNTCAYTIQ
ATENMLQEEGKALFGSLQNRQLAGLKALVQFSAIQRMKSSHSVIQKHFTEMLAVLLPVSN
AEGTPTILEVDFFNLLVGLVLSIPVLYQEENVDLQPSAISTAYNQQHLVHLVTMAHIVQV
LLSSQDLNAGAVGGGDAEEVRAAAALYSTVSQHTEGLKSGVSASMTVDTVKRGVLPFLRC
AALFFHCLTGVPAPEELSNAAVSSESQLSLLCSYLALPCNLFQLFQDHQDTATSLIQRWC
GNKSISDTLKGEMHIIRYPRTRNRLIDLPEDYSVLLNQASHFKCPNSSDDERKHPTLCLF
CGVMLCSQNPCCQVPLNGEGVGACTAHAATCGAGVGMFLRVRECEIVLMASRTRGSTYPA
PYLDEYGETDPQLNRGNPLHLCPERYRKLNQLWQQHCILEEIARSLEVLNVMFAFEWQML
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaggtgaaggaccagtaaacgcgctccagttatgcacgagatggtgggaggcc
tcagaccagcggtctgcaatactccagtatttggcggagaaggtcccccaaatttattgc
ctgcaggctgaaccccagctggtgaaagaggaggagcgagtacaggaatgcatcctgcag
cctctggagtacttcctgtttggggaggaccctagtgtcggcctagagaaacttcaacaa
agaaacggcagctcttcctctcagctgtgtggacgtgtttttaaagagggcgagacggtc
tactcctgcagggactgtgcaatagaccccacctgtgtgctgtgtatggactgctttcag
aacagtgtacacaaaagccaccgctacaagatgcatgcatcgtcaggaggaggcttctgt
gactgtggcgatttggaggcttggaagaccggcccctgttgctcccaacacgactccggc
accgccatagccatggaaacagatgagtgtgtgttggaggcagctctgcaagaacgtgct
caggtgctgttccaggttctgctgcagtacatcactgacctgatggtgtgggaggaaggg
gatgagctcccagaggagatggaacctagatcaaaggagaacacatactactgtgtgctt
tacaatgatgagcaccactcatacgatcatgtgatctacactcttcagagagccatcaac
tgtaactccactgaagctcaagcacacactgttcttattgacaaggagggtcgcagagct
gtcagaagaggaagcctgagatcttgtcaacaagccaaagagcttataaggaccagctca
gagcatattacccagcagcccttgcgagtggagctcctgcattcagtggtcatggctcat
caaacctttgcccttaggctgggtacctggttccagcagatcactggctactcagtgggc
tttaggcaggtgttttgccaggtggctctggagcccagtgctgacagcagtaaaccttgt
ttaatcagcagactcatgttgcatgatgccagactttacaaaggagctcgcaaggttatc
cacgaattgattttctgtagcctgctgatggagacagaatacaagaggcagtttgccatg
aaattcacagagctttacaagcaattacaggaagatttcatcagagatgaccacgagagg
aacatctccattacagccttgtctgtacaaatcttcactgtacccactctggccagacag
ctgattgaagagggcaatgtaataaaggtgattatcgaaacagttatggagatgctgagg
gaacatctggatagcaaccaacgcttccattttcagggctataattctgacaagttctta
agggtccaagtgatattccatgacctcaagtacatactaatcagtaaacccacagtatgg
actgaccagttaagaggaaagttcctggaaggtttcactgtttttcttggattccttaat
tgcatgcagggaatggaggaagtcaaaaggcaggttggtcagcacattgaggtggagcca
gaatgggaggcgggtttcaccattcagatccagcttcgccacattctgtctatgtttcag
gactggtgctcctctgatgaaagagttttactgctagcctttcaggaatgccaccgtgca
cttcagcgctgcaccaaccagcccttccacagtgagcccactgaccgctacatgtgcaag
cacatcctccacactcgctcttacaaagtctctcaagaacctgtctccatccacctgccc
atcaccagactcctggctggcttgtatgtcctcttgtgtcggacaggagctgtaaaatac
ctccctgactttgtggatcctgagcagatggacttgcccttttttgctgagttccctctg
cgttgtgtggtattagctgctcaggtgtctgcggaaatgtggcgtcgaaatggcctctcc
ctcgtcagccaggtgtactactatcaggatgtgaaatgcagagatgagatgttcgacaaa
gacatcatcatgcttcagattgctgcttccaaaatggaccccaaccactttgtcatgcta
attctactgagatttgagctctttgaggtgtttaatggaaattgctcaagtaaagatcag
gacctccagaaacagtggaacagattgacagaagaaatgctctacctgttgattatcatc
acaggtgagcggtatgtccctggagtcagtaatgtgactaaagaggaggtgacaatgagg
gaagtgattcatctgttgtgtatagaacctatggctcacagtagcatggttaaagccctg
cccgaaaatgaaaatcaggaaactgggcttgaaactgttatctcaaaagttgccacattc
aagaaaccaggagtttctggtcatggtttatatgaattgaagaaggaatgtcttaaggag
tttaaccccttcttttaccattacaccaaatcacagcacagcaaggctgaagatgcacag
aagaagagaagggcccaggaagggagtgacaaagctcttaggccaccagtaccccctccc
ttcacccaggccttctccagcatagtgcgactgctctgctgtgatgtgtttgtccatgtg
ctgaggagagtgctgcagagggcagttgaggagcgttctgctctttggactgaagccatg
atccaacgggcattgcatcttgtaggccaggctttgctagaggaaaaaaatcagttggag
gcctgtagtgttgaagaagtgacatttgacttcagtctcaaagctcgaaaagttggctcg
gatcatgggaaatcattgttccatttcctgtccaaaatgaagtcgcatccttcccttgaa
gctcacaacgacatgataaattggacactacagatgtttgagattgtgaagtgcctgcgt
gagaaatccatcccctctgcttcgtgtgcagcagatcagaccaaggcagaggagagcatt
catgacaaagaaaaagcagagcggaaaaggaaggctgaggccgctaagcttcacagacag
aagatcatggctcagatgtctgccatgcagaagaactttattgaaactcacaagatgcta
tatgacaatgtgcctgagagtgggagtcagggcgagccagtggtctcaacagagagcagt
gtcatggagctggagagtcgtgtggctgtggggcctaagcagggagtgtgtcctgctgac
tgggaaactctcacttgcattctgtgtcaagaggaacaggaggtgcaggctcaggcccca
gccatggtgcttactgcctgtgttcagagatctacagttctcacccagtgcaggggcaaa
accctcaccccaaaggaaagctcctaccccttgttcgtgcccccagatctagctgtgggc
acacacactgggagctgtggccacgtcatgcatgccacctgttggcaaaagtattttgag
gcggtacagaacaccactaggaaccggctgcatgctgagctgattatagacctggagaat
ggagagtacatgtgcccgctctgcaagtctctctgtaacactgtggtgccccttgttccc
atggagcccagcaaactgaactatgagagtgctgagatgattggtcagttcctcactctt
cctcgttggatacaaatagtgctcgctcggatcaagggactcagagtccttcaaggagct
gaaaatacatctgagacagggaaagaggaaactgggttgtttttggaggacacacagact
gacttcaggtcaatcctcagctttggagttcagccaccgccaaaatactcaagcagtata
atggaaatgctggtagtgtgtgccactacagtgcacagggtgggtctgcagacagcaccc
aatgagctgtgcccttacgtgcctgtcatgacctggaacacttgtgcctacaccatccag
gctacagaaaacatgctacaggaagagggaaaagctctgtttggatctctgcagaacaga
cagctggctggtctcaaagcactggtacagttctccgctattcagcgaatgaagagctct
catagtgtcatacagaagcattttacagaaatgctagcagtattgttacctgtgtctaat
gcagaaggcacacccacaatattagaagtagatttctttaatctcttggtggggctagtt
ctgtctatacctgtgttgtaccaagaggagaatgttgacctgcagccttcagcaatcagt
actgcttataatcaacaacacctagtgcaccttgtcaccatggcccacatagtgcaggtc
ctactatcatcacaagacttgaatgcaggagcagtaggaggaggagacgcagaggaggtc
agagcagcagcagccctgtattctactgtatcacaacacactgaggggctgaagtctggt
gtatctgcttccatgactgtagacacagtgaagagaggtgttctaccctttctccgctgt
gctgcacttttctttcattgccttacaggagtgcctgctccagaagagctgtcgaatgct
gcagtgtccagtgagagtcagttgtcccttctgtgtagttacctcgcgctgccctgcaac
ctgtttcagctcttccaggaccaccaggacactgcaacatccctaatacagaggtggtgt
gggaataaatctatatcagacaccctgaagggagaaatgcacatcatcaggtatccacgg
acgagaaacaggttaatagatcttcctgaggactacagtgtgctgcttaaccaggccagc
cattttaagtgtccaaactcatcggatgatgagcggaagcatccgacgctgtgtctgttc
tgtggggtcatgctgtgctctcagaacccgtgctgtcaggtgccgctgaatggcgaaggg
gtgggagcttgcacagcccatgctgccacgtgtggagctggagtaggcatgttcctcagg
gtgagagagtgtgagattgtactgatggccagcaggacacgtggaagcacatatccagct
ccttacctcgatgaatatggggaaacagaccctcagctaaaccgtggcaatccgctgcat
ctgtgtcctgagcgctacaggaagctgaaccagctgtggcagcaacactgcatccttgag
gagatcgcccgtagtctggaggtgctcaatgttatgttcgcttttgagtggcagatgctc
tga
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integrated database retrieval system
