KEGG   Pangasianodon hypophthalmus (striped catfish): 113539098
Entry
113539098         CDS       T05759                                 
Symbol
vcl
Name
(RefSeq) vinculin isoform X1
  KO
K05700  vinculin
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04510  Focal adhesion
phyp04517  IgSF CAM signaling
phyp04518  Integrin signaling
phyp04519  Cadherin signaling
phyp04520  Adherens junction
phyp04810  Regulation of actin cytoskeleton
phyp04820  Cytoskeleton in muscle cells
phyp05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04517 IgSF CAM signaling
    113539098 (vcl)
   04518 Integrin signaling
    113539098 (vcl)
   04519 Cadherin signaling
    113539098 (vcl)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    113539098 (vcl)
   04520 Adherens junction
    113539098 (vcl)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    113539098 (vcl)
   04810 Regulation of actin cytoskeleton
    113539098 (vcl)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    113539098 (vcl)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:phyp04812]
    113539098 (vcl)
   04147 Exosome [BR:phyp04147]
    113539098 (vcl)
Cytoskeleton proteins [BR:phyp04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Cross-linking proteins
     113539098 (vcl)
Exosome [BR:phyp04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   113539098 (vcl)
SSDB
Motif
Pfam: Vinculin Talin_IBS2B Mob_Pre
Other DBs
NCBI-GeneID: 113539098
NCBI-ProteinID: XP_026790457
LinkDB
Position
Unknown
AA seq 1131 aa
MPVFHTKTIESILEPVAQQISHLVIMHEEGEVDGKAIPDLSAPVAAVQAAVSNLVRVGKE
TVQTTEDQIMKRDMPPAFIKVENACAKLVEAARMLKTDPYSVPARDYLIDGSRGILSGTS
DLLLTFDEAEVRKIIRVCKGILEYLTVAEVVESMEDLVTYTKNLGPGMTKMAKMIDERQQ
ELTHQEHRMMLVNSMNTVKELLPVLISAVKIFVTTKCAKSHGVEEAMKNRNYTFEKMSAE
INEIIRVLQLTSWDEDAWANKKDTEAMKRSLALIESKMNQAKAWLKDPNGLPGTPGEHAL
RQILDEAGKVGELCAGKERREILGTTKTLGQMTDQVSDMRARGQGPTPMGMQKAQQVGQG
LDILVGKVQNAARKLEALSNAKQAIAKRIDAAQSWLADPHGGPEGEENIRALLAEAKRIA
DLCEDPKERDDILRSVSEIAGLTAKLAELRRQGKGDTPEARLLAKQIGTALQNLQAKTNR
AVANMRPAKAAVTLEGKMEQAQRWINNPNVDDRGVGQAAIRGLIAEGRRLANSLPGPYRQ
ELLAKCERAEQLMLQLCDLAARGEGESPQGRAVAAQLLDALKDLKAKMQEAMTQEVSDVF
SDTTTPIKLLAVAATAPPEAPNRDEVFEERASNFENHANRLGATAEKAAAVGTANKSTVE
GIHATVKSARELTPQVTSAARILLKNPGNQAAYEHFETMKNQWIDNIEKMTGLVDEAIDT
KSLLDASEEAIKKDIDKCRVAMANVQPQMLVAGATSIARRANRILLVAKREVENSEDPKF
REMVKAASDELSKTISPMVMDAKAVAGNIQNPGLQKSFLDSAYRILSAVGKVREAFQPQE
PDFPPPPPDLDQLHVNDEQAPPKPPLPEGEVPPPRPPPPEEKDEEFPEQKAGEMVSEPMM
VAARQLHDEARKWSSKPEATDERFVTAAADVDIDDEDEFTDNEDDYEPELLLMPSNQPVN
QPILAAAQSLHQEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGNKRALIQCAKDIA
KASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISEEE
SEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ
NT seq 3396 nt   +upstreamnt  +downstreamnt
atgccggtgtttcacacgaaaaccattgagagtatcctggagccggtggctcagcagatc
tctcacctggtcatcatgcatgaggagggagaagttgatggcaaagcgattcccgatctc
agtgcgcccgtggccgctgtacaggcagctgtcagcaaccttgtgcgggtggggaaggaa
acagttcagaccacggaagaccagattatgaagagagacatgcctccggcctttattaag
gtggagaatgcttgtgccaagctggtagaagcagctcggatgctgaagacagatccgtat
tctgttcctgctcgagattaccttatcgatggctcccgtggtatcctctcaggcacgtca
gacctgctacttacctttgatgaggcagaggtgcgtaagatcatccgtgtctgtaagggc
atcttggagtacttgacagtagcagaagtggtggagagcatggaggacttggtcacgtac
acaaaaaacctgggaccagggatgacgaagatggcaaaaatgatcgatgaacggcagcag
gagctgacacaccaggagcaccgcatgatgttggtcaactccatgaacacggtgaaggag
ctgctgcctgtgctcatatcagctgtaaaaatctttgtgaccaccaagtgtgccaagagc
catggcgtagaggaagccatgaagaacaggaactacacctttgagaagatgagtgctgag
atcaatgagatcatccgagtgctgcagctcacttcctgggatgaagacgcctgggccaac
aaaaaggacacagaagcgatgaagagatcgctagcactgattgagtcgaagatgaatcag
gctaaagcatggctcaaagatcctaatggcctaccaggcacaccaggtgagcatgctctg
cgtcagattctggacgaggccgggaaagtgggagagctgtgtgctgggaaggagaggagg
gagatcctgggaaccacaaagactttgggacagatgactgatcaggtgtcggacatgcga
gccagaggtcaggggcctactcccatgggtatgcagaaggctcagcaggtggggcagggt
ttggacatcctagtggggaaagtgcagaatgctgctcgcaaattggaggccctgagcaat
gctaagcaggctattgctaagaggatagatgctgctcagagctggctggctgatcctcat
ggaggtcctgaaggagaggaaaatatcagagctctgttagctgaagccaagcgcatcgcc
gatctgtgtgaggaccccaaagagagagacgacattctgcgctctgttagtgagatcgct
ggcctcaccgccaaactcgctgaacttcgcagacagggtaaaggtgacactcctgaagcc
agactgctggccaaacagatcggcactgctctacagaacctgcaggccaagaccaaccgt
gccgtagccaacatgcggccagccaaggctgctgtgaccctggaaggcaagatggagcag
gctcagcgctggatcaacaaccccaatgtggatgaccgtggagtgggtcaggctgctatc
cgtgggctgatagcagaaggccgcaggctggctaactctctgccagggccatacaggcag
gagctgctggcgaagtgtgagcgtgcggagcagctgatgctgcagctgtgtgacctggct
gctcggggagagggagaaagtcctcagggtcgtgccgtagctgctcagctccttgatgct
cttaaagatttgaaagcgaagatgcaggaggcaatgactcaggaggtttccgatgtattt
agtgatactacgactcccatcaagcttctggctgtggcagctacagctccacccgaggcc
cccaaccgggacgaggtctttgaagaaagagcgtctaactttgagaaccatgctaacaga
ctgggggccacagcagagaaagctgctgctgtagggacagccaataagagcacagtggaa
gggatccatgccacagtgaagtcagccagggagttaacacctcaggttacttctgctgca
cgtattttgctcaagaaccctggcaaccaggcagcgtatgaacattttgaaaccatgaaa
aaccagtggattgacaatattgaaaaaatgactggtttggtagatgaggctattgacact
aaatccctcctggatgcctcagaagaagccatcaaaaaagacattgataagtgccgtgtg
gctatggcgaacgttcagccccagatgctggtagctggagccactagcattgccaggcgg
gctaaccggatactcctggtggctaagagagaagtggagaactctgaagaccctaaattc
agagagatggtgaaagcagcctcagacgaactgagcaaaacaatttcgcccatggttatg
gatgccaaggctgtagcaggaaacatccagaatccaggccttcaaaaaagctttctggac
tcagcgtacaggattctgtctgctgttgggaaagtcagagaagccttccagcctcaggag
ccagacttccctcctcctcctccagacctggatcagctgcatgtaaatgatgaacaggct
cctcctaaaccaccactcccagagggagaagttcctcccccaagacctcctcctcctgag
gagaaagacgaggagttccctgagcagaaggctggggagatggtgagcgagccgatgatg
gtggccgccaggcaactacacgatgaagcccgcaagtggtctagtaagcctgaagcgaca
gacgagcgttttgtgaccgctgcggcggacgtagatatagacgatgaggacgagttcaca
gacaacgaggacgattacgagcctgaactgctcttaatgccctccaatcagcccgttaac
cagcccattctggctgctgcccagtccttgcaccaggaagctcgcaagtggtccagtaag
ggtaatgatattattgcagcagctaagcgaatggccttgctgatggctgagatgtcacgt
ctggtgcgtggaggcagtggcaacaagcgcgcactgatccaatgcgctaaagacatcgcc
aaggcctctgatgaggtcacacggctggctaaagaggtggctaagcagtgtactgacaaa
cgcattcgcaccaacctactgcaggtgtgtgagcggatccctaccatcagcactcagctg
aagattctgtccacagtgaaggccaccatgctgggacgcactaacatcagcgaggaagaa
tcagagcaggctactgagatgctggtccacaacgcacagaacctgatgcagtcagtgaag
gagacggtgagagaggccgaggcagcctccattaaaatccgtacggacgcaggcttcact
ctccgctgggtcagaaagaccccctggtaccagtaa

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