Pangasianodon hypophthalmus (striped catfish): 113539163
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Entry
113539163 CDS
T05759
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113539163 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
phyp04131
]
113539163 (scarf1)
Membrane trafficking [BR:
phyp04131
]
Endocytosis
Phagocytosis
Scavenger receptors
113539163 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
113539163
NCBI-ProteinID:
XP_026790541
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
MECLNIVLSCVGLLFLCLPASTQKLSSTGRNVCLSPRDSALVCCLGWAQQDDECTIPLCE
GQNACMHNEVCVYPGVCRCKPGFYGFQCKTPCPPDFWGSDCREQCLCHPHGRCDPATGVC
KCFPTHWGNLCQNSCKCGRHGRCDSVYGNCTCDEGWWSSTCTKVCQCHPSTSSCDPATGL
CLCKEGYWGQKCSRRCNCYNSPCQQHSGECQCTSGWWGPNCDRQCICDLSHSKCDPRTGE
CVCQPGYKTPFCHELCSAGYYGSGCSKRCGYCEGGKPCSKLDGSCSSCAPGWNGTRCDQR
CPFGYHGIRCQEVCPHCRKGEPCDAVTGMCAYCDPGWTGPRCDQLCDNGTFGDSCRFLCS
PCYHGRCDHVTGSCLCQPGFQGESCNSSCPDKMYGINCSSACDCGGDACHPATGECPYSS
RAGLLAGLLIPLLVLILALLFCCCCCGSPADGKDRVAVGDGSTTGRMKHHVYTVLANMSS
AMPCLALWSSGLPRVTVSHHDPELTFNHSFIEPPSGWVSDSFETDEDGEAMYCVPPREDI
PAVAGGELQFQEMGSKCNFLSEPPTFSSEDMSLAFGIPRTSSIAKSKRPSVSFAEGTKFS
PKERRGSTQELARKPKTPWGVLMLSSLQGSQGSHGQTEGEKEETSDEAKASSEEQAANSL
PEADSERYGSTPSRTHLTVPGSRRHTSSNPKKSLQPQPSSDGDEMDKGTDKVSTVYVTVG
KPVRASKADLNSEGPVQAMLRRLGSIQRQREEAAQPKSKGAVVSKPPRRKLGARASLWEQ
AAVSGQPDVVLRKPSRRKHTPLSSPCTVGATDSLQENSAPKRPLSSILKSVPESTTQVSG
GNTDTTTASESDTKSEAIYETVAVSDEVSTSSQVITNETLTAQDKEPNYENVYINHS
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcttgaacattgtcctgtcctgcgtgggactgctcttcctctgccttccggcc
tccactcagaaactctcatcaacagggaggaatgtttgcctcagcccaagggactcggct
cttgtgtgttgtttaggatgggcccaacaggatgatgagtgcacaataccactctgtgaa
ggacagaatgcctgcatgcacaatgaggtgtgtgtgtatcccggagtgtgcagatgtaaa
ccaggcttctatggattccagtgcaaaactccctgtcctcctgatttctggggctcagac
tgtcgtgagcagtgcctgtgtcaccctcatggccgctgtgaccctgctacgggtgtgtgc
aagtgctttcctacccactggggcaatctgtgccagaatagctgtaaatgtggacgtcac
ggccgctgcgactccgtctacggcaactgcacttgtgatgagggctggtggagttccacc
tgcaccaaggtgtgccagtgccaccccagcacctccagctgtgaccctgccacaggcctc
tgcctctgcaaagagggctactggggtcagaagtgcagccgtcgctgcaactgctataat
tcaccatgccagcagcactcaggtgagtgtcagtgcacaagtggctggtggggacccaac
tgtgatcggcagtgcatctgcgacctgagccacagcaagtgtgacccccgcacgggagag
tgtgtatgccagccgggttacaagacccccttctgccacgagctgtgcagtgcgggatac
tacggcagcggctgttccaagaggtgtggatattgtgaaggaggcaaaccttgctctaaa
ctggacggctcatgcagctcctgtgctccgggatggaacggcacacggtgtgatcagcgc
tgcccatttggttaccatggcatccggtgccaggaggtgtgtcctcactgtaggaagggg
gaaccatgtgatgctgtaacaggaatgtgtgcatactgcgaccctggctggactggaccc
aggtgtgaccagttgtgcgacaatggtacttttggggacagctgccgtttcctgtgcagt
ccttgctatcacggtcgctgtgatcatgtgacaggaagttgtctttgccaacctggcttt
cagggtgagagctgtaacagttcatgtccagataagatgtatggaataaactgctcatca
gcctgtgactgtggaggcgacgcatgccatcctgccactggagaatgtccctacagcagt
cgggcggggcttctagcaggacttctgattcctctgctggttctcatacttgccttgttg
ttttgctgctgctgttgtggaagtccagctgatgggaaggacagagtggcagtaggggac
gggagcacgacgggtcgaatgaagcatcacgtctacacagtgctagccaacatgagttca
gccatgccatgtctcgctctctggtcctctgggcttcccagggttacagtttctcaccat
gatccagagctcacctttaaccacagcttcatcgagcccccctcaggctgggtctcagac
tcttttgagactgatgaagacggagaggccatgtactgcgtccctcccagagaagacatc
ccagctgtggcaggaggtgagctccagttccaggaaatgggctcaaagtgtaacttttta
tctgagccaccaacattcagcagtgaggacatgtctctggctttcggcattccaaggacc
tctagcattgccaagtccaagcggccctctgtttcctttgcagaaggcaccaagttcagc
ccgaaagagcggcgtggctcgactcaggagcttgcccgcaagcccaaaactccatgggga
gtcctaatgctctccagcctgcagggatcgcaggggagccatgggcagacagaaggagaa
aaagaggagacaagtgatgaggcgaaagcctcctcagaggaacaagcagctaactcctta
cctgaggcagactcggagaggtacggctccaccccatctaggactcatttaactgtacca
ggcagcaggcggcacacttcgtccaaccccaagaagagcctacagccacagccctcgtct
gacggggatgagatggataaagggacagacaaggtgtccactgtctatgtgactgtaggc
aagcctgtacgggcatcaaaagcagacttgaactctgaggggccggtgcaggccatgcta
cgcaggctgggcagcatccaaagacagagagaggaagcagcacagcccaaaagtaagggg
gctgtcgtgtcaaagcccccacgcaggaaactgggggcgcgggccagcttgtgggagcag
gcggctgtttcaggacagccagatgttgtcctgaggaagcccagccgtagaaaacacacc
cctcttagctctccatgtacagtaggggctacggattcgctgcaggagaacagcgccccc
aagagaccgctgtcctctatactcaagagtgtcccagaaagcactacgcaggtctcaggg
gggaacacggacacaacaacagcctctgaatcagacactaagagtgaggctatctatgag
acagtggctgtatcagacgaggtgtctacttcatcacaggttatcactaatgagactctg
acagcacaagataaagagcccaattatgaaaatgtttatataaatcactcatga
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