Pangasianodon hypophthalmus (striped catfish): 113539172
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Entry
113539172 CDS
T05759
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113539172 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
phyp03041
]
113539172 (prpf8)
Spliceosome [BR:
phyp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
113539172 (prpf8)
Complex C
U5 SnRNP specific factors
113539172 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
113539172
NCBI-ProteinID:
XP_026790554
LinkDB
All DBs
Position
Unknown
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGVPPPAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPEEDSSVAEWFYEHQPLKDTTKYVNGTTYRRWQFSLPMMST
LYRLANQLLTDLVDRNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
TTESAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQV
SWNYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcgtttccttaccgaggagtcccaggtgggatgccaccgggcgttcctcct
cctgctcctgttcctgactacatgactgaggagaaactgcaggaaaaagcccgaaaatgg
caacagctgcaggcaaagcgctactcggagaagaggaaattcggttttgtggatgctcag
aaggaggacatgcctcccgagcatgtgcgcaaaattatcagggaccatggagacatgacc
aacaggaagttccgtcatgacaaaagagtctaccttggggctctgaaatacatgcctcat
gctgtactcaagctgctggagaacatgcctatgccttgggagcagattcgagatgtacca
gtgctttaccacatcacaggagctatttcctttgttaatgaaattccctgggtcattgag
cccgtctacatcgcacagtggggtacaatgtggatcatgatgcgacgtgagaaaagagac
aggcgacacttcaagcgcatgcgtttcccgcccttcgatgatgaagagcctcccctggat
tatgcagataacatccttgatgtggagcctctggaggccattcaaatggagttggacccc
gaagaggacagctctgtggcggagtggttttatgagcatcagccactgaaggacacaaca
aagtacgtcaatggaactacatacagacgctggcagttcagtttgcccatgatgtctaca
ctgtatcgtttggccaatcagctgcttactgatttggtggatagaaactacttttacctg
tttgacctgaaggccttcttcacttcaaaggcattgaacatggccattcctggaggaccc
aaatttgaacccctagtcagagacatcaatttacaggatgaagactggaatgagtttaac
gacatcaacaagatcatcatcagacagcctattaggacagagtacaagattgctttcccg
tacttgtacaacaaccttccccatcatgtgcacctcacttggtaccacacacctaatgtg
gtgttcattaagacagaggatcctgatctgcctgctttctactttgacccactcatcaac
cccatctctcacagacactctgttaaaagccaggagccactgcctgatgatgatgaggag
tttgaacttcctgagtatgtggagcctttccttaaagagacacctctgtatactgacaac
acagccaatggaattgctttattgtgggcacctcgtccgttcaacttgcgatcagggaga
acccgtcgtgccatcgacgttcctctcatcaagaactggtaccgtgagcactgccctgca
gggcagcctgtaaaagtacgcgtctcttatcagaaacttctgaagtactatgtgctcaat
gctctgaaacacagaccacccaaagcacagaagaagaggtaccttttccgttccttcaag
gccaccaaattctttcagtccacaaagctggactgggtggaggtggggctccaggtgtgc
cgacagggttacaacatgctgaacctgctgattcacagaaagaacctcaactacctgcac
ttggactacaacttcaacttgaagcctgtgaaaaccctcaccacaaaagagcgtaagaag
tcccgtttcgggaatgcgttccacttgtgtcgtgaggttcttcgtctgagcaaactggtt
gtggatagccatgtgcagtacagactggggaatgttgatgcattccagttggcagatgga
ctgcagtatatctttgcccatgttggtcagctgactggcatgtatcgctacaagtacaag
ctgatgagacagatcaggatgtgcaaggacttgaaacatctcatttactatcgcttcaac
acaggcccagttgggaagggaccaggttgtggcttctgggctccaggatggagagtgtgg
ctcttcttcatgaggggcatcactcctctgctggagaggtggcttggcaatctgttggcc
aggcagttcgaaggtcgacactccaagggggttgcaaagactgtgactaaacagcgtgtg
gagtctcactttgacttggagttgagagctgctgtgatgcacgacatcctagacatgatg
cctgagggaatcaaacagaacaaggccaggacaattctgcagcatctcagtgagtcctgg
aggtgctggaaggccaacattccatggaaggtcccagggcttcccacccccattgaaaac
atgatcttgagatatgtcaaggccaaagctgactggtggaccaacacagcacattacaac
cgagagcgaatcagacgaggagcaactgtggacaaaactgtctgcaagaaaaaccttggc
cgcctcacacgactctacctgaaggctgagcaggagagacaacacaactacctaaaggat
ggaccatacatcactgctgaagaggcagtggctatctacaccaccacagtgcactggctg
gagagtcgacgcttctccccgattccctttccccctctgtcatacaaacatgacaccaag
ctgctcatcctggctctggagaggctcaaagaggcttacagtgtgaaatcaaggttgaat
cagtcccaacgtgaagagttgggtctgattgagcaggcatacgacaatcctcacgaggct
ctgtccaggatcaagcgtcatctcctcactcagagagcgttcaaagaggtgggcatcgag
tttatggacctgtacagtcacctagtgcctgtgtatgatgtggagcctctggagaagatc
acagacgcttacctggaccagtacttgtggtatgaggctgacaagcgcaggcttttcccg
ccttggatcaaacctgctgacacagagccacctccactgctggtatacaagtggtgccaa
ggaatcaacaacctgcaagacgtgtgggagaccacagagggagagtgtaatgtcatgctg
gagtcacgctatgagaagatgtacgaaaagattgacttgacgctgcttaacaggcttctg
cgtctgattgtcgaccacaacattgccgattacatgacggcaaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcatacggcatcatcaggggcctgcagtttgcc
tccttcattgtgcagtactatgggcttgtgatggacctgctcgttctgggtcttcaccgt
gccagtgagatggctggacccccacagatgcccaatgatttcctcagcttccaggacagt
actacagagagtgcccaccccattcgcctgtactgcagatacatcgaccgcatccacatg
ttcttcaggttttctgctgatgaggccagggatctgatccagcgctacctcactgaacac
cctgatcccaacaacgagaacattgtaggctacaacaataagaagtgctggcccagagat
gctaggatgaggctgatgaagcatgatgttaacctgggccgtgccgtgttctgggacatt
aagaatcgccttcctcgctctgtgaccaccgtgcagtgggagaacagctttgtgtcggta
tacagtaaagacaaccctaacctgctcttcaacatgtgtggatttgagtgccgtatcttg
cccaaatgccgcaccagttacgaggagttcactcacaaggatggagtgtggaacctgcag
aatgaggtgaccaaggaaaggacagcgcagtgcttcctgcgagtggatgatgaatcaatg
cagaggttccataacagagtgcgacagattctcatggcctctggatccaccactttcacc
aagatcgtgaacaaatggaacacggctctgattggtctgatgacctatttccgtgaggct
gtggttaacactcaggagttgctggaccttttggtgaaatgtgaaaataagatccagacc
cgtatcaagattggtctgaactccaaaatgcctagccgtttccctcctgtcgtcttctac
acccccaaagagttaggaggtctgggcatgctttctatgggtcacgtgctcatcccacaa
tctgacctgaggtggtccaaacagacagacgtgggcatcactcacttccgttccggtatg
agtcatgaggaggatcagctgattcccaatctgtatcgctacatccagccatgggagagt
gagttcatcgactctcagagagtctgggctgaatatgctctcaagagacaggaggccatt
gcccagaacagacgtttgactcttgaggatttggaggattcctgggacagaggtattcct
cgtatcaacaccctgttccagaaagacaggcacacgctggcctatgacaagggctggaga
gtcagaacagacttcaagcagtatcaggtgctgaagcaaaatccattctggtggactcac
cagaggcacgatggtaaactgtggaatctgaacaattaccgcacagacatgatccaagca
ctgggaggagtggaaggaattttggaacacactctgttcaagggtacatactttcccacc
tgggagggtctcttctgggagaaggccagtggttttgaggagtccatgaaatggaagaag
ctgaccaatgcccagagatctggtctgaaccagatccccaatcgacgattcactttgtgg
tggtctcccacgatcaacagagccaatgtgtacgtgggtttccaggtgcagttggatctc
acaggaatcttcatgcatggcaaaattcccactctcaaaatctccttgatccagatcttc
agagctcacttgtggcagaagattcatgagagcattgtcatggatctgtgtcaggtgttt
gaccaagaactggatgctctagagattgaaactgtccagaaggaaaccatccatcctagg
aagtcttacaagatgaactcctcctgcgcagatattctgctttttgcatcctacaagtgg
aatgtctcaagaccatcactgcttgctgactccaaggatgttatggacagcaccaccact
cagaagtactggattgacattcagctcagatggggagactatgactcacatgacattgag
agatatgccagggccaagtttctggactacaccacagataacatgagtatctacccatcc
cctactggggtgctcattgccattgatctggcatacaatctgcacagtgcctatggaaat
tggttccctggcagcaagcctctgatccagcaggccatggctaagatcatgaaggccaac
cctgccctgtacgtgctgagggagcgcatccgcaagggtctgcagctctactcctccgag
cccactgagccctacctgtcctcacagaattatggagaactcttctccaatcagatcatc
tggtttgtggatgacaccaatgtgtacagagtcaccatccacaagacctttgagggcaac
ttgaccacgaaaccaatcaatggggccattttcatctttaatccaagaactgggcaactc
ttcttaaagatcattcacacatctgtgtgggctggacagaagcgtctgggacagctggcc
aagtggaaaactgctgaggaagtggctgctcttattcgatcactgcctgttgaagagcag
cccaagcagatcattgtgaccaggaagggcatgttggatcctcttgaggtgcacttgttg
gatttccccaacattgtcatcaaaggctctgagctgcagctgcccttccaggcttgtcta
aaggtggagaagtttggggacctcattctgaaggccactgaaccccagatggtcctgttc
aatctgtacgatgattggttgaagaccatttcttcttacactgccttctcacgtttgatc
ttgatactgagagccctccatgtgaacaacgaccgtgcaaaggtgatcctgaagcctgac
aaaaccaccatcactgagccacatcacatctggcccactctgactgatgaggagtggatc
aaggtggaggtgcagctcaaagatctcatcttggctgactatggtaaaaagaacaatgtg
aacgtggcttctctgacacagtctgagatcagggacatcatcctgggtatggagatctcc
gctccctctcagcagaggcagcagattgctgagattgagaagcagactaaagagcagtct
cagctaacagccacgcagactcgcactgttaacaaacatggtgatgaaatcattacctca
accaccagcaactatgagacccaaaccttctcctcaaagactgaatggagagtcagggcg
atctctgcagccaacttgcacttgcgtaccaaccacatctacgtgtcgtctgatgacatt
aaagaaactggatacacttacattctgcctaagaacgtgctgaagaagttcatctgcatc
tctgacttgcgtgctcaaattgccggatatctctatggaacaagtcctccagataaccca
caggtgaaagaaattcgctgcattgtgatggtgccacaatggggcacccatcaaactgtt
cacctgcccaatcagctgccacagcacgaatatctcaaggaaatggagccgcttggttgg
atccacacccagcccaatgaatcgcctcagttgtctccccaggatgtcaccacacatgct
aaagtcatggctgataatccatcctgggatggcgagaagaccatcattattacctgcagt
ttcactccaggatcttgtacgttgactgcttataagctgactcctagtggatatgagtgg
ggcaggcagaacacggataagggcaacaaccccaagggttacctgccatctcactatgaa
agggtgcagatgctgctgtctgatcgcttccttggcttcttcatggtgcctgcccaagtg
tcctggaactacaatttcatgggtgttcgacacgaccccaatatgaagtacgagctgcag
ctgtctaacccgaaagagttttatcacgaggttcacaggccttctcacttcctcaacttt
gcatcgctgcaggagggtgagatctacaacgctgaccgtgaggatatgtacgcttag
DBGET
integrated database retrieval system
