Pangasianodon hypophthalmus (striped catfish): 113539175
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Entry
113539175 CDS
T05759
Symbol
robo1
Name
(RefSeq) roundabout homolog 1
KO
K06753
roundabout, axon guidance receptor 1
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
113539175 (robo1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
phyp04515
]
113539175 (robo1)
Cell adhesion molecules [BR:
phyp04515
]
Immunoglobulin superfamily
ROBO family
113539175 (robo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Ig_5
Unc5_NetrinR_N
Ig_Rha78A_N
Ig_PDGFR_d4
DUF7908
Motif
Other DBs
NCBI-GeneID:
113539175
NCBI-ProteinID:
XP_026790565
LinkDB
All DBs
Position
Unknown
AA seq
1662 aa
AA seq
DB search
MRMTWSGAFIIFIIITTTTLVWFVESSLVPDSGTAEAAKEGVTPAPASGHDEDNTLAYTG
SRLRQEDYPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTVEWYKDGERVETDRDDSRSH
RMLLPTGSLFFLKIIHGRRSKPDEGSYVCVARNYLGEAVSHNASLEVAILRDEFRQNPSD
VMVAAGEPAVMECQPPRGHPEPTISWKKDGVNVDDRDERITIRGGKLMITNTRKSDAGKY
VCVGTNMMGERESEIAELTVLERPSFLRRPSSQSVLVEQSVEFRCEAQGDPIPTVRWRKE
DGELPKGRFEIRDDHTLKLKRLSSADAGSYTCLAENMMGKTEATATLTVHVMSVPPVFAV
RPRNQVVGLGRTVTFQCEATGSPQPAIFWQREGSQNLLFSSQPPQSSSRFSVSQTGDLTI
TGVERGDGGYYSCQALNIAGSVITKALLEVTDIISDRPPPVIRQGPTNHTVPLDGTVVLG
CKATGTPPPTILWKKDGVLVSTHDSRFKLLDSGALQIRYAKLGDTGVYTCVATSPSGEAS
WKAYLEVQEFGIGVQPGRPTDPNLIPSAPSKPEVTDVTRTTVSLSWKPDLHSGATPTSYI
IEAFSHASGSSWHTLAEHVRTESYVLKGLKPSAVYLFLVRAANAYGLSDPSPISDAIKTQ
EIPPTSQGVEHGQIQRELGDVVIHLHNPTILSSSSIRLQWTVEQQSQYMQGYKVMYRVSS
ESGQTRSDWAVFEVRSPAEYTAVIAQLRKGTTYEFKIRPFFNEFQGTDSDIKVGKTLEEA
PSAAPRGVTVTQNGDNGTAILLSWQAPPEDERNGVVQEYRVWCLGNESRYHINRTVDGST
FSMVITGLVPGIRYGVEVAASTGAGPGVKSEITYFQXDSSGKMTQSIVDPEDTLSQQISD
VVKQPAFIAGIGAACWIILMVFSIWLYRHRKKRSGLSTSYAGIRKVPSFTFTPTVSYQRG
GEAVSSAGRPGLLNISDSATQPWLADTWPNNCSNQNDCSINCCTASNGNSDSNLATYSRP
ADCIANYSQMDSKPSNLLVPDSSLYGDVDLSNKINEMKTFNSPNLKDGRLVGPAGQPTPY
ATTQLIQSSLGTNHIGSADLNEKQNWKGCQGTPQKQQEVTSQLQHSIMEQNKLNKDHYRS
GDRTMPATIPYNQAPDPNPAGSYSSSDRGSSTSGSQGQKKGGRAPKVPKQSAMNWADLLP
PPPVSPPPCQDYGISMDDSYEAELQCPVPPSRMYLQPDELEEEADMERGPTPPVRGTASS
PAAVSYSHQSTATLTPSPHEEMQPMLMENSENLHERRRQLVSPPPPPRPVSPSHTYGYIS
GPLGLDTDGMEDEEEADETDAEVPLVHQRYPHALVPTHQHGVHPRLTLRGLDQTPASSTC
ELDSSVTGSMINGWGSASEEDSGSSGRSSIISSSDGSFFTDADFAQAVAAAAEYAGLRVA
KHSGKGPPHYTGPGARKYQNLPSGHRPASPFSTDSNMSAAVVQKRPPKKQKQQAAGHFQR
REAYTDDLPPPPIPPPAMLKSPTHPAKAAAETGRRSSSAESRDKRDKKLRDASDTRTSSS
ERREAQERQRAQRAGKASKPEPSAGRQDPEDIVPYSRPSFPGVHNPRGEREPSSSSSMSS
RGSGGRRRGEGVSGSRRNPAEISLNTVGAFQPGDEQLEMAES
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgcggatgacatggtcaggggccttcatcatcttcatcatcatcaccaccaccacactc
gtctggtttgtggagagctctttggttccagactcgggcactgcagaggcggctaaggaa
ggggtcacgccggcccccgcctcaggacacgatgaagacaacaccctggcctacacagga
tctcgtctgaggcaggaggactacccgccccgcatcgtggagcatccctccgacctgatc
gtgtccaagggcgaacctgccaccctcaactgcaaggccgagggacggcccacgcccacg
gtggagtggtacaaggatggcgaaagggtggaaacggatcgggacgactcgcgttcccat
cgcatgctccttcccaccggttctctgttcttcctgaaaataatccacggacgtcggagc
aaaccggacgaaggctcgtacgtctgcgtggctcgcaactatctcggagaagccgttagc
cacaacgcgtcgctggaagtagccattctccgtgatgagttcaggcagaaccccagcgat
gtgatggtggccgctggagaaccggcagtgatggagtgccagcctcctcgcggtcaccca
gaacccaccatctcctggaagaaagatggcgtgaacgtagacgacagagatgaacgtata
acaatccgaggcgggaagctgatgatcaccaacacgaggaagagtgacgccgggaagtac
gtgtgtgtgggaacaaacatgatgggggaacgggagagtgagatcgccgagctcaccgtg
cttgagagacccagtttcctgcgcaggccgagcagtcagtcggttctggtggagcagagt
gtggagttcaggtgtgaggcgcagggagaccccatccccaccgtccgctggaggaaagag
gacggagaactacccaagggaaggttcgagatccgtgatgaccacactctgaagctgaag
aggctgagctcggccgacgccggctcctatacctgcctggctgagaacatgatggggaag
acagaagccacagccaccctcaccgtccacgttatgtctgtgcctccggtgtttgcggtg
cggccgaggaaccaggtggtcgggttgggacgcaccgtgacttttcagtgtgaggcaaca
ggaagcccacagccggccatcttctggcagagagaggggagtcagaacctgctgttctcc
tctcagcctcctcagtcctccagccggttctccgtctctcagaccggtgatctgaccatc
acaggagtggagcgcggagacggcggctactacagctgccaggcgctcaacatcgcagga
agtgtgattactaaagctctgctggaggtcaccgatatcatctcagaccggcctccgcct
gtgatccgtcaggggcccaccaatcacacggtgccgcttgacggtacggtggttctggga
tgcaaggcgacgggaacgcctccacccaccatcctgtggaagaaagacggggttctggtg
tccactcatgactcccggttcaagctgctggactcgggcgctctgcagatccgctacgcc
aagcttggagacacgggtgtgtatacatgtgtagcaaccagtcccagcggagaagcatcc
tggaaggcctacctggaagttcaagagtttggtattggagttcagcctggtcgacccact
gaccccaacctgatccccagcgctccctccaaacccgaggtcactgatgtcactcgcacc
accgtgtctctgtcctggaagcctgaccttcactccggagcgacgcccacctcatacatc
atcgaggccttcagtcatgcatccggcagtagctggcacaccctagcagagcatgtgagg
actgagagctacgtgttgaagggcctgaagcccagcgccgtctatctgttcctggtcaga
gcggctaatgcatacggcctgagtgacccgagtcccatcagcgacgccataaaaacacag
gaaattcctccaactagtcagggagtggagcacggacagatccagagggagctcggggac
gttgtcatccacctccacaatcccaccatcctgtcctcctcctccatccgtttgcagtgg
acagtggagcagcagtcccagtacatgcagggctataaggtgatgtaccgcgtgtcgtct
gagtcggggcagacgcggagtgactgggccgtgttcgaggtcaggagtcctgccgagtac
acggccgtgatcgctcagctccgcaaaggcaccacctacgagttcaaaatacgacccttc
ttcaacgagttccagggcacggacagcgacatcaaagtgggcaagacgctggaggaagcc
cccagcgctgcgcccagaggtgtgaccgtcacacagaatggagacaatggcacggccatc
ctgctgtcctggcaagcacctcctgaggacgagcgtaatggagtggtccaggagtacagg
gtctggtgtttgggaaacgagagtcgttaccacatcaaccgcacagtggacggttccacc
ttctccatggtgatcacgggtctggtcccgggcatccgttacggcgtggaggtggcagcc
agcaccggagccggacccggagtgaagagcgagatcacctacttccagncagactcctca
gggaagatgactcagtccatagtggacccagaggacacactctctcagcagatctcagac
gtggtaaagcagccagccttcatcgccgggatcggcgcggcgtgttggatcatcctcatg
gtgttcagcatctggctgtaccgccatcgcaagaagaggagcggcctgagcacgagctac
gccggcatccgcaaagtgccatcgttcaccttcacgcctaccgtttcctatcaaagagga
ggagaagctgtgagcagtgctggcaggcctggtttgttgaatattagcgactcggccacc
cagccctggctagcggacacatggcccaacaactgctccaaccagaacgactgcagcatc
aactgctgcaccgccagcaacggcaacagcgacagcaacctggccacctacagccgccct
gctgactgcatcgctaactacagtcagatggacagcaaacccagcaacctcctggtgccg
gactcatccctctacggagacgttgacctctccaacaagatcaacgagatgaaaacgttc
aacagccccaacctgaaggacgggcgattggtggggcctgcgggccagcccacgccttac
gccaccacccaactcattcagtccagcctgggcaccaaccacattggcagcgctgacctc
aacgagaagcagaactggaagggctgccaagggacacctcagaaacagcaggaagtgacc
tcacagctgcagcacagcatcatggagcagaacaagctgaacaaggaccactacagaagc
ggagaccgcaccatgccagccaccatcccgtataaccaggctcctgatcccaatcccgcc
ggctcctacagcagctccgaccgaggcagcagcacatccgggagtcaggggcagaagaaa
ggggggcgagcacctaaagtgcccaagcagagcgcaatgaactgggctgacctgctgcct
cctccacccgtcagcccaccaccatgtcaggactacggcatctcaatggatgacagctac
gaggctgagctccagtgcccagtccctccgtcccgcatgtacctacagcctgatgagttg
gaggaggaagcagatatggaacgcggccctactcctccggtccgaggcaccgcctcctct
cctgccgctgtgtcctacagccaccagtccactgccaccctcacaccatccccacacgaa
gagatgcagcccatgctcatggagaactcagagaacctacacgagcgcagacgacagttg
gttagccctcctccaccaccacggcctgtctccccgtctcacacgtacggctacatctcc
ggccccctgggtctggacacggacggcatggaggacgaggaagaagcagacgagacagat
gcagaagtgccactggtccaccagcgataccctcacgcgctcgtccctacacatcagcac
ggggtgcatccgaggctgacgctgcgtgggctggatcagacgccggcgtccagcacgtgt
gagctggacagctccgtcactggctccatgatcaacggctggggctctgcgtctgaggag
gacagcgggtcatcgggacgctccagcatcatcagctcatccgatggttccttcttcacc
gatgctgactttgcacaggccgtggctgccgccgccgagtacgccggcctccgcgtcgca
aagcattctgggaaagggccaccacactataccgggccaggagcacggaaataccaaaac
ctgccttcaggccaccgtccagcaagtcccttttctacagatagtaatatgagtgcagct
gtggtgcagaaaagacctccaaagaaacagaaacagcaagcagctggacacttccagcga
agagaggcttacacagatgaccttcctccgccacccatcccacctccagccatgctcaag
tccccaactcacccagccaaggcagcggcagagacaggaagaaggtccagctcagctgag
agcagggacaagagagacaagaaactcagagacgcctcggacacaagaaccagctcgtca
gagcgtcgagaggctcaagaaagacagagggctcagagagcagggaaagccagcaaacca
gagccaagcgcaggacgccaggacccagaggacattgtgccctacagtcgaccctctttc
ccaggcgtccacaatccccggggtgagagagagccgagctcctccagctccatgtcatca
cgaggttctggaggccggaggagaggtgaaggagtctctgggagccgcaggaatcctgca
gaaattagcctcaacaccgtaggagccttccagccaggagacgagcaactggagatggca
gaaagctga
DBGET
integrated database retrieval system
