Pangasianodon hypophthalmus (striped catfish): 113539295
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Entry
113539295 CDS
T05759
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03440
Homologous recombination
phyp03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113539295 (brca2)
03460 Fanconi anemia pathway
113539295 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
phyp04121
]
113539295 (brca2)
03036 Chromosome and associated proteins [BR:
phyp03036
]
113539295 (brca2)
03400 DNA repair and recombination proteins [BR:
phyp03400
]
113539295 (brca2)
Ubiquitin system [BR:
phyp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
113539295 (brca2)
Chromosome and associated proteins [BR:
phyp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
113539295 (brca2)
DNA repair and recombination proteins [BR:
phyp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
113539295 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
113539295 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
113539295
NCBI-ProteinID:
XP_026790779
LinkDB
All DBs
Position
Unknown
AA seq
2651 aa
AA seq
DB search
MFDDFFHQIETELGPLNSDWFEELTVRASEDGCENSTVVEHDTTAHKDEVVFRAPAKTPV
LDSQMCSTPRIFRRRRPHSPALGIEDSPESGMQNLFLVPPGAESSPCLFGFAKDSQQFEK
DWGSLKTSACLDLLDTPTDLTPQSTSAQRICESLGAQLNPDLSWSSSFNTPSALTPTVIL
SKTEGQSPPVSFLRDKEVIIVRKLFPSLSKGTEATSASISSVQHNDTLTDGNVQAEEQKS
DSSSDNIGGVWRQTVPDAIKDGDVRTTVESVLNDAEDVLSFLFTNSGSALRRVKTKERKK
RVNGVSKEVKSNHVTVDHTTDCTSASKTDTSTAIASLKSPLFSSQLNNKDFTQWTPLSLS
DVQDSKTNQVCISEISSKHTSPHVDSSVKSDIVKNITQLGQSSSCTSEQQRFSPDSCHEK
SQERSSLLEASPALTFSRKPRKFVYPVQNSESTRQHNVTDAVNHYQESIPCHKEDTHTDT
RDHLVQPAETTVKQDHSASLNIDHDLDMTQLCKAFAEDFTQEVNLLKSSHKSAQSSHDRV
LMPTCTAKEISEVQTKTESVMQCDGDINHQAAKIIDLTNIQSLESTICDSGYPTVCSGFS
LETPSCSGNEHLHSGFKTANNKIIVIPPEALMKAKAALDQSLEQSNPLTHTGTSSVTEPT
KVGTNQYNSYKPVTANTAGEKLASESYHHGHKSGRETSDESVLISETAAENIPSTFMCQT
NESGFKTASNKSITISSVNLEKAKDIFMELDEEKFDSCLSNNELQVCNVKDAKPSNFDLK
NSRKPSQHSTGNDDGISSLTASQRADVTELCSMLEEAGSQYEFTQFYHTKIGSKCPDSMQ
SEREWDPEILAGIDFDDSFNCDLSERQVSKKHQSKADVHASVPNSLTNGDVGIQSINIRK
SCHIPWEMPNMANDSLKEKSFCSGFKTAKGNAVTISEKCLSKARSIFADIEDTEGNFGLE
SGCKADIVKQKAKQSDDHQDESCRIAMESELDLKLITNASSITKEAEMCKQTCSKANLET
LQGPIDQKPDLIQSNTVNFGFSTAGGKEVKISEKALQNAKKLLNEVANDKETKHDNSPAK
TKATSWTSIHNSSDVLAVLHDSKMSDGALPEVGKEHHFGNSPDKKQAVCPSPRSMESNGF
KMASGKGVSVSASAIQKSKTIFKDIDDSVRSSDETKSTEKNAKLDLEGNTGQHAFVNGFK
MASGKGVSFSEKAFMKAKMFFKNCDPDCVDISQAKGDDTSVMDDCGFEAVAGNIVHLPGM
DSLNKETLKKDSTDLNKYVQRKFTKTSAETLQPPSGCGFSTASGAVVSVSTEALQRAKAM
LDDSNAASPGQRRLEITEEKCISKNETLISGKSCGFSTASGRNVAISEKALQKAKSLFTD
CDVDGLEPDPSNLSAAKTSATGPKHIRLPFNAASNKNIAVSEKELNKGKDEFVSCDDVSV
DTHNTESHLNMQTRQHENYSSEALSTKTESIPASAGKSEGTYENMMSGGPKADHLGSGHF
GFSTASGKGVCVSKSALEVAYEMFRDCDAQPVTNGQHKITSGAPSTNINKTPVVPKTKAT
SPSLPSQDNPSLLSHRSLNLDGCTVTQQKYFEQEAIACTKALLEDDLNENGLLSSLDTGI
RQSPSLCQERCLEVNTGIRKRTSDDKSLTGQPPLKRRLVSEFVQISEDRTVCTPVKSSPN
GTLRDRRIFKYNLKPNITYPSRNVVDQTSANPVHQIRRPSDPKAPVFIPPFQKNLKAEMP
KNCVSTAVAQVPSVFVPPITKKNASGSVYVKDSPQISGDSPAIKSSSCENSRNHSARKPE
DQKAETQTNREEKLENHTTVPCEKKVIWQQSLELAQDMQNMRIRKKKRQRVRPLPGTFYL
AKTSGVTRVSLKEAVGYKCPELHTEEQLYQHGVSFKVSQITSENAEAFRFSCDEFFKRDI
LRETGGVQLADGGWLIPDNRGMLGKEEFYRALCDTPGVDPKLISEAWVYNHYRWVVWKRA
SMERAFPEVMGGRCLTPEQVLLQLKLRYDVEVDHSRRSALKKIMERDDTPAKTIVLCVCG
IAKCDHSPVGSEEAIDTTDKNPEMPAAVIWLTDGWYSIKALLDFPLSTLLRKGRLRVGVK
LLIHGAELIGSQDACPPLEAPDSLMLKISANSTRRARWDTKLGFHKDPRPFSLLLSSLYA
NGGVVSCVDIIVLRSYPTQWMEKKPGSVFVFRNERAEEREAARYNSTKQKTMELLFSKIQ
AQIEKEEEEKKKTSRSRTFSLHEIKNLQDGEELHEAMESDPAVVEAHLSTQQVKALSSYR
RALTERTRAELQDRMHKAVQEAEGGCANRDVTPVWKLSIADSNDLHSSRVYTLNIWRPSV
ELRSLLREGCRYKAYHLATSETKKRSSTSNIQFTATKKTQFQDIEVCPEWLSLHFPARQS
VKFRDLQSPGFSSPCGEVDVVGYVISILDRQGTSPVLYFVDEKFDFVSVRICSSLAVLAL
EDLVKPLALLAVSNLQLRQQSGPVPSLYAGEQALFSTNPKEPHLQEDISHLKTFVEDYEH
FFTVAEEKLSNLIPTGFLNSCESPRTPGLPSVPKPNVRNNVTPHQTSRVFSPFTPVTKRP
PIPTGNSDSKDPKSVKRKRGMEYLSRLQNPAPLVSLGMVRSPRVSKTFNPPRRCETPRNP
QTVPTPPPENK
NT seq
7956 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgacttcttccatcaaattgaaacagaactcgggccactaaactcggactgg
tttgaggagttgactgtgagagcttctgaagatggatgtgaaaactccactgttgttgaa
catgacaccacagcacacaaggacgaagtcgttttcagagctccagctaagacgccggtc
ttggacagtcagatgtgttcaacacccagaatatttaggcgtagacggccgcattctcct
gcgttaggtattgaagattctcccgagtcaggaatgcagaacttgtttcttgttccaccc
ggcgcagaatcaagcccatgcctgtttggctttgctaaagacagccagcagtttgaaaaa
gactggggatctctaaagacaagtgcatgcttagacctacttgacacaccaacggattta
acaccacaatccacatctgcacagcgcatctgtgagagccttggagctcagttaaatcct
gatctatcttggagcagttcctttaacacaccatcagcattgacccccacggttattttg
tccaaaacagaaggccagtctccaccagtaagttttctcagagacaaagaagtcattatt
gtacgaaagctgtttccatcactctcaaaaggcacagaagcaacatccgcaagtatatcc
agtgtgcaacataatgacacgctaacagatgggaatgtccaggcagaagaacaaaaatca
gattcgtcctctgacaatataggaggcgtttggaggcagacggtaccggatgcgataaag
gacggtgatgtgcggaccacagtggagagtgttcttaatgatgctgaggacgtgctctcc
ttcttattcacgaacagtggctcagccttgcgaagggttaaaaccaaggaaagaaaaaag
agagtgaacggtgtttctaaggaagtaaagtcaaatcatgtgacagtagatcacactaca
gactgtacatcagcatcaaagacagataccagcactgctatcgcaagtttaaagtctcct
ttattttcaagtcagcttaataataaggatttcacacagtggactcctctgagtttatct
gacgtccaagactccaagacaaaccaagtgtgtatctccgaaatatcaagtaaacacact
agtcctcatgtagactcctcagtcaaaagtgatattgttaaaaatatcacacagcttgga
cagtcttcttcatgcacgtccgagcaacagaggttctctcctgattcgtgtcatgagaag
tctcaggaaagaagttctttattggaggcatctccagcacttaccttctcaagaaaaccc
aggaagtttgtgtatccggtgcaaaattcagaaagtacaagacagcacaatgtcactgat
gctgtgaaccactaccaggaatctattccgtgtcataaagaggatacacacacagacact
agagatcatttggtccagccagcagaaactactgttaagcaggatcattctgcaagtctt
aacatagaccatgatctagatatgactcagctttgcaaagcgttcgcagaagatttcact
caggaagtgaacttgttaaaatcgtcacacaagagtgcacagagcagccatgatcgtgtc
ttaatgccaacttgcacagcgaaagaaataagtgaagtgcagactaaaacagaatctgtg
atgcagtgtgatggtgacatcaaccatcaggcagcaaaaatcattgatttaacaaatata
cagtctcttgagagcacaatctgtgacagtggctatcctacagtttgttctggttttagc
ctggaaactccatcctgtagtggcaatgaacatcttcattctggttttaaaacagcaaat
aataagattattgtaatacctcctgaagccttaatgaaagccaaagcagcattagaccaa
tccttagagcaatccaatcctttgactcacacaggcacttcaagtgtaactgaaccaacg
aaagtgggtacgaaccagtacaactcttacaaacctgttacagcaaacactgctggagag
aaattggcttcagaaagctatcaccatggacataaatctggaagagaaacttctgatgaa
agtgttttaatatctgagacagctgcagagaatattcctagcacattcatgtgccaaaca
aatgaatctggcttcaaaacagcatctaacaaaagtattacaatctcatctgtgaatctc
gagaaagctaaagacattttcatggagttggatgaagagaagtttgattcatgtctgtca
aataacgagttgcaggtctgcaatgtaaaagatgccaagccatctaattttgacttgaaa
aacagtcggaaaccttcacaacattccactggtaatgatgatggaatttcgtctttgaca
gcttcgcaaagggcggatgtgacagagctgtgcagtatgttagaagaagcaggcagccag
tatgagtttacgcagttttatcacacaaagattggctcaaaatgtccagatagcatgcag
tctgagagagagtgggatcctgagatacttgctggtattgactttgatgatagttttaac
tgtgatttatctgaaaggcaggtgtcgaaaaaacatcagtccaaggcagatgtgcatgct
tcagtcccaaacagtctgacgaatggagatgttggtattcaaagtataaatattaggaag
tcatgccatataccatgggaaatgccaaatatggctaacgacagtctgaaagaaaagtct
ttttgttctggctttaaaactgcaaagggaaatgctgtgaccatctctgagaaatgtctg
agcaaggcaagaagcatttttgcagatatagaggacaccgaaggaaactttggtctcgag
agtggttgcaaagcagatattgttaaacaaaaggcaaaacagtcagacgaccaccaggac
gagtcttgcaggattgccatggagtctgagcttgacctaaagctaataacgaatgcaagc
tcaataacaaaagaagctgaaatgtgcaaacaaacgtgtagcaaagcaaatctggaaaca
ctccaaggacctatagatcagaaaccagatttaattcagagcaacacggtcaattttgga
tttagtactgctggagggaaagaagtaaagatctcagaaaaagctcttcagaatgcaaag
aaacttctaaatgaagttgcaaatgacaaagaaaccaagcatgacaattcccctgcaaaa
acaaaagccacttcttggacttcaatacataattcttctgatgtgttggcagtacttcat
gattcaaagatgtctgatggagctttaccagaagttgggaaagaacaccattttggaaac
agccctgacaaaaaacaggcagtgtgtccgagtcctcgatccatggagagtaacgggttt
aaaatggccagcggcaaaggagtgtctgtctcagcaagtgcgattcagaaatcaaaaacc
attttcaaagatattgatgacagcgtgagaagctcagatgaaacaaaatcaacggaaaag
aatgcaaaactggatcttgaaggaaatacaggccagcacgcatttgtcaacggattcaag
atggcaagtggtaaaggagtgagcttttctgaaaaagcatttatgaaagccaagatgttt
tttaaaaattgtgatcctgattgtgtggatatttctcaagcaaaaggagacgacacaagt
gtgatggatgattgtggctttgaggcagttgcgggaaacatcgtgcatttgcctggaatg
gacagtctgaacaaagagactttaaagaaagactccacagatttgaataaatatgtccaa
aggaaattcactaaaacctccgctgagacccttcaaccaccatctggctgtggtttcagt
acagcaagtggtgctgtggtgtctgtttcaactgaagcacttcagagggctaaagctatg
ttagatgattcaaatgctgcttcacctggtcaaaggagattggaaataacagaagagaag
tgtatttccaaaaacgagactcttatttcaggaaaaagctgcggctttagtactgcaagt
ggaaggaacgttgccatttctgagaaggccctccagaaagcaaagagtctttttactgac
tgtgatgtggatggattagaacctgatcccagtaatttgtcagctgcaaagacatcagca
acaggtcctaagcatataagattgcctttcaatgcagccagtaacaaaaatattgctgtg
tcagaaaaggagctgaacaagggtaaagatgagtttgtcagttgtgatgatgtttcagtt
gacacacacaacactgagagccacttaaacatgcaaacaagacaacatgaaaactatagt
agtgaagctttaagtactaagactgaaagcattccagctagtgctggaaaatctgaagga
acatatgagaacatgatgagtggaggcccaaaggctgatcacttgggatcaggtcatttt
ggctttagtacagccagtggaaaaggtgtttgtgtgtcgaaatcagccctcgaggtagct
tatgagatgttcagagattgtgatgcacaaccagttactaatggacagcataaaattacc
agtggagctccatctacaaatattaacaagacaccagttgtgccaaagaccaaagccact
agtccatctctcccatcccaggataatccttccctgctgagccaccgttctttaaatctt
gatggatgcacagtaacccagcaaaaatattttgaacaagaagcaatagcttgcactaaa
gcacttttagaggatgatctcaatgagaacggtttgttgagtagcttggacactggcatt
aggcaaagtcctagtctatgtcaggagagatgcttagaggtgaacacaggaatacgaaaa
cggacttcagatgacaagagtttgacaggtcaaccccctttgaaaagaagacttgtgtca
gagtttgtccagatctcagaagacagaacagtctgtactccagtgaaaagcagccccaat
gggactctgagagacagaagaatcttcaaatacaacttgaagcccaatatcacttatcca
tccaggaatgttgtggaccaaacatcagccaacccagttcaccaaataaggagaccatca
gaccccaaagctccagtgtttatacccccatttcaaaaaaatcttaaggctgagatgcca
aaaaactgtgtttccacagctgtggcccaagttcctagtgtgtttgttccacccattaca
aagaaaaatgcctcaggtagtgtttatgtgaaggattcaccacaaatttctggcgattcc
cccgccatcaaaagctctagttgtgaaaacagcaggaatcactcagccaggaaaccagag
gaccagaaagcagagacacaaaccaatagagaggagaagttggagaatcacactactgtc
ccttgtgaaaagaaagtcatttggcagcagtccttggagttagcacaagatatgcagaac
atgagaatcagaaaaaagaagcgtcagagagttcgacctctgcctggcacgttttacttg
gctaagacgtccggggtgaccagagtttctctgaaagaggctgtaggatacaagtgtcct
gagctacacacagaagagcagctctatcagcatggtgtatccttcaaagtgtcccagata
actagcgagaatgccgaggctttccggttcagctgcgacgagtttttcaaacgtgacatt
ctcagagagactggaggggttcagctggctgatggtgggtggctgattccagataacagg
ggaatgctgggtaaagaggagttctacagagccttgtgtgatactcctggtgttgacccc
aaactgataagtgaagcatgggtgtataaccactatcggtgggttgtgtggaaacgagcc
tccatggaaagagccttcccagaagtgatgggtgggcgttgtctcactccagagcaggtg
ctcctacagctcaagctcaggtatgatgttgaggtggaccacagtcgaagatcagccctg
aagaagattatggagagagacgacacaccagccaagaccatagtgctctgcgtgtgtgga
attgccaaatgtgatcacagtccagtcgggtcagaggaggccatagacaccacagataag
aatcccgagatgccggctgcagtcatatggcttactgatggctggtattccattaaagca
ctgctggactttcctctgtctaccttgctgcgaaagggccgtctcagagtgggtgtgaaa
cttctgatccacggcgcagagttgattggctctcaggatgcctgtcctcctctagaggct
cctgattcgctcatgctcaagatttcagccaacagtacaagacgagctcgctgggacacc
aagcttggcttccataaagaccctcgacccttttcactgttactttcatcactgtatgct
aatggaggagtggtgagttgtgtggacatcatcgtgttgcggagttacccaacacagtgg
atggagaaaaagccaggttcagtctttgtgtttcgcaacgagcgagctgaagaaagagag
gcagcacgctacaacagcaccaaacaaaagaccatggagctcctgttctctaaaatacaa
gcccagattgagaaagaggaagaagaaaagaagaaaaccagtagaagccgcacattcagt
ctccatgagataaaaaatctgcaggatggggaggagcttcatgaagcaatggaaagtgat
ccagctgttgtggaggcccatctaagcacacagcaggtgaaagctctgagtagctacaga
cgagctttaaccgaaaggacgagagcagagctacaggaccggatgcacaaggctgtacag
gaggctgaagggggctgcgctaaccgagatgttactcctgtctggaaactctccatcgct
gactctaatgatttgcacagcagccgtgtatacacactgaatatctggcggccctctgtg
gagttgcgctccttactgagagagggctgcagatacaaggcttatcatcttgccacatca
gagaccaagaaacgctctagcacttccaacatccagtttacagccaccaagaaaacacag
tttcaggacattgaggtttgcccagaatggttaagtctacattttcctgcaagacaatca
gtgaaattcagagatcttcagagccctggattcagctctccgtgtggagaggtcgacgtt
gtgggatatgtaatctccatcttggacagacaaggtacgtctcctgtgttgtattttgtg
gatgaaaagtttgactttgtctctgtgaggatctgcagcagcctggctgttctcgctctg
gaggacctggtaaagccattagctctactggctgtaagcaacctgcaactccgacagcag
tctggcccagtccccagcctttatgctggagaacaagcactattctctacaaaccctaaa
gaaccccacttacaggaagatatttctcatctgaagacatttgttgaggattatgagcat
ttcttcacagttgctgaagagaagctctcaaacctgattccaacaggtttcttgaactct
tgtgagtccccaagaactccaggtttaccatctgtgccaaaaccaaatgtcagaaataat
gtaactccacatcagacaagccgagttttctcccctttcaccccagtgaccaaaagaccc
cctatacccactggaaactcggacagtaaggacccaaagagtgtgaaaaggaagcgtggt
atggagtacctgtcacgactccaaaacccagcacccctcgtttctctgggaatggtccgt
tctcccagagtcagcaagacatttaaccctcccaggaggtgtgagactcctcgtaatccc
cagacagttccaactccaccaccagagaacaagtag
DBGET
integrated database retrieval system
