Pangasianodon hypophthalmus (striped catfish): 113539353
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Entry
113539353 CDS
T05759
Name
(RefSeq) retinoic acid receptor RXR-gamma-A-like isoform X1
KO
K08524
retinoid X receptor alpha
Organism
phyp
Pangasianodon hypophthalmus (striped catfish)
Pathway
phyp03320
PPAR signaling pathway
phyp04148
Efferocytosis
phyp04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
phyp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
113539353
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
113539353
03320 PPAR signaling pathway
113539353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
phyp03000
]
113539353
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
phyp03310
]
113539353
Transcription factors [BR:
phyp03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
113539353
Nuclear receptors [BR:
phyp03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
113539353
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
113539353
NCBI-ProteinID:
XP_026790869
LinkDB
All DBs
Position
Unknown
AA seq
431 aa
AA seq
DB search
MDHTEYLHLSSSVQVDHSHLRTPSHAPIGSMVTHLHPSVISSIASPFSVITSSSSLSSTA
SSLPSTPNMGFNPQMNTLDASRDVKPPASISSSYQCISPGSLSKHLCSICGDRSSGKHYG
VYSCEGCKGFFKRTVRKDLTYTCRDSKECLIDKRQRNRCQYCRYQKCLAMGMKREAVQEE
RQRSRDKNDNEVDSSSGLNEEMPVEKILDAELSVEPKTDTYIQTNADNSTNDPVTNICQA
ADKQLFTLVEWAKRIPHFSQLPLDDQVILLRAGWNELLIASFSHRSVSVKDGIVLGTGLH
VHRNSAHTAGVGSIFDRVLSELVSKMKDMQMDKTELGCLRAIVLFNPDAKGLSSPSEVEA
LREKVYASLESYTKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFL
MEMLEAPHQIT
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggatcatactgaataccttcatctgagttcttcagtacaggttgaccacagtcacctg
aggacaccttcccatgcacccatcggctccatggtaacacacctccacccatctgtcata
agcagtattgcgtcacccttctctgtcatcacctcttcctcatcactgagctcaaccgcc
tcgtccctgcccagcacacccaacatgggcttcaatcctcagatgaacaccctggatgct
tcaagagacgttaaacctcccgctagcatcagtagcagctaccagtgcatcagtccaggc
tctctgtcgaaacacctgtgctccatctgtggagatcgttcttctggtaaacactatgga
gtatacagctgtgaaggctgcaagggcttcttcaagaggactgtccggaaagacctgaca
tacacatgccgggacagtaaggagtgtttaatagataagcgccagaggaaccgctgtcag
tactgccgctatcagaaatgcctggcaatgggaatgaagagggaagctgtgcaggaagaa
aggcaacggagtcgagataaaaatgacaatgaggtcgattccagcagtggtttaaatgaa
gaaatgccagtggagaagattttagacgctgaattatctgtggagccaaaaacagacaca
tacatccagactaatgcagacaactcaacaaatgatcctgtcaccaacatctgccaggca
gctgataaacagctcttcaccctggtggagtgggcaaaacgcatcccgcacttctctcag
ctacctctggatgaccaggtcatcctcctgcgagcaggctggaacgagctcctcatcgca
tcgttctctcatcgctctgtgtcagtgaaggatggtattgtcttaggcacggggctgcat
gtccaccgcaacagcgctcacactgcaggagtgggatccatcttcgacagggttctttct
gagctggtgtctaaaatgaaggacatgcagatggacaagacggagctcggctgcctcaga
gccatcgttctcttcaacccagatgccaaaggtttgtccagtccatccgaggtagaggca
ctgagagaaaaagtttatgcctcactggagtcatacaccaagcacaaatatccagaccag
ccgggcaggtttgcgaagctcctgctgcgtcttcctgctcttcgctccatcggcctcaag
tgtctcgagcatcttttcttctttaagctcattggcgatacaccgatagatacgttcctc
atggagatgctggaagctccacaccaaatcacatga
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